Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2077 ATGAAGTTTTTTGTTATTTGCAGTGTGGTTATTATGGGGATAACATTGGAGTTAGAAGCCGTGCCTACACCGTCGCAGCTTCAATTGGAAGAAAATGCTATAATCAATAGTGGATGGTGGAATAGATCAAAGTCAGTAGCTTCACGCAATATCTGTTCATGGTATGGTATGTCTTGCAACGTCGCTGGAAGCGTAACTAGAATCAACTATCCCTTTTATACACCTGGGATTCGATTAGCAACACTAAACCTCTCTGCTTTCAAGAATTTAGAATGGCTTGAGGTCTCACACTGTGGACTACAAGGGACTATCCCATCTGATATTGGTAATCTCCCTAAACTCACTCATCTTGATTTGTCCCATAATTCTCTTGACGGTGAAATACCTCCTGCACTGGCAAATCTTACCCAATTAGAGAGCCTAATCATATCTCACAACTACATTCAAGGCTCAATTCCTGAGTTGTTGTTTCTAAAAAATCTCACTGTCTTAAATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACCCAATTAGAGAGCCTAATCATATCTCACAACAACATTCAAGGCTCAATTCCTGAGTTGTTGTTTCTAAAAAATCTCACTGTCTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCATGCACTGACAAATCTTACCCAATTAGAGAGCCTAATAATATCTCACACTTACATTCAAGGCTCAATTCCTGAGTTGTTGTTTCTAAAAAATCTCACTGTCTTAGATTTGTCCGATAATTCACTTGATGGTGAAATACCTCCTGCACTGTTAAATCTTACCCAATTAGAAAGCCTAATCATATCTCACAACAACATTCGAGGCTCAATTCCTAAGCTGTTGTTTCTAAAAAATCTTACTATCTTAGATTTGTCCTATAATTTACTTGATGGTGAGATACCTCATGCACTGGCAAATCTTACCCAATTAGAGAGCCTAATCATATCTCACAACAACATTCAAGGTTATATTCCCCAGAATTTGGTTTTCTTGGAAAGTCTTACTTTGTTAGATCTATCAGCCAACAAAATCAGTGGGACCTTGCCCTTGTCACAGACAAATTTCCCAAGTTTAATATTACTTGACATTTCCCACAATCTACTTTCTGGTTCCTTAATACCCTTGTCAGTAGGAAACCATGCACAGCTAAATACTATTTACCTCAGAAATAACTCAATTAGTGGAAAAATTCCACCAGAGCTTGGATATTTGCCTTTCTTAACTACTCTGGATCTAAGCTACAATAATCTTATCGGAACAGTTCCTCTATCTATGCTAAATGTCGCTGAAGTGGACCTTTCATTCAATAATTTGAAGGGTCCCTATCCAGCTGGTTTAATGGAGTCTCAGCTATTAGGGAACAAGGGTGTATGTAGCGAATACGATTTCTATTACATAGATGAATATCAATTCAAGCATTGTTCTGCCCAAGACAACTTAGTAGTCATGGCCGGCGGCAACAAAGTAAGGCACAGGCACAATCAGCTGGTCATAGTTCTCCCTATCCTGTTTTTTCTAATCATGGCCTTCCTACGACTCGTGCGGCTAAGGCATATTCGCATTGCAACTAAGAACAAACATGCAAAGACAATTGCAGCCACTAAGAATGGGGACTTGTTCTGTATATGGAATTATGATGGAAACATAGCCTATGAAGACATCATTAGAGCAACCCAAGACTTTGACATGAGATATTGTATTGGAACAGGTGCCTATGGGAGCGTTTATAGGGCACAGTTACCAAGTGGCAAGATTGTTGCCGTGAAAAAACTCCACGGATTTGAAGCAGAGGTGCCAGCTTTTGATGAGAGTTTCAGAAATGAGGTCAAAGTATTATCAGAAATAAAGCATCGACATATTGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATATATGAGTACATGGAGAGAGGCAGCTTGTTTTCAGTGTTGTTTGATGATGTGGAAGCCATGGAATTGGATTGGAAAAAGAGGGTTAACATTGTGAAAGGCACTGCACATGCTCTGTCCTATCTTCATCATGACTTCACTCCTCCAATTGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTTAGACTGGGAGCCCAGTGTTTCAGACTTTGGCACAGCCCGATTCCTTAGCTTTGATTCATCCTATCGAACTATAGTTGCTGGAACCATTGGGTACATAGCCCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAGGTGTGATGTGTACAGCTTTGGAGTGGTGGCACTCGAAACTTTGGTGGGATCGCATCCTAAGGAAATACTCTCATCACTTCAATCAGCATCTACTGAGAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGCCAACAATGTCAGTTTTAATGGAAATAGTTAGTGTTGCCATAGTTGCATTTGCGTGCTTAAATGCCAATCCTTGCTCTCGCCCAACAATGAAATCGGTCTCTCAATGTTTTCTTACTCAGCTTACACCATTAGACATTCCTTTGCGTGAGATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCATTATTTAAATTTGTGA 2625 0.3992 MKFFVICSVVIMGITLELEAVPTPSQLQLEENAIINSGWWNRSKSVASRNICSWYGMSCNVAGSVTRINYPFYTPGIRLATLNLSAFKNLEWLEVSHCGLQGTIPSDIGNLPKLTHLDLSHNSLDGEIPPALANLTQLESLIISHNYIQGSIPELLFLKNLTVLNLSYNSLDGEIPPALANLTQLESLIISHNNIQGSIPELLFLKNLTVLDLSYNSLDGEIPHALTNLTQLESLIISHTYIQGSIPELLFLKNLTVLDLSDNSLDGEIPPALLNLTQLESLIISHNNIRGSIPKLLFLKNLTILDLSYNLLDGEIPHALANLTQLESLIISHNNIQGYIPQNLVFLESLTLLDLSANKISGTLPLSQTNFPSLILLDISHNLLSGSLIPLSVGNHAQLNTIYLRNNSISGKIPPELGYLPFLTTLDLSYNNLIGTVPLSMLNVAEVDLSFNNLKGPYPAGLMESQLLGNKGVCSEYDFYYIDEYQFKHCSAQDNLVVMAGGNKVRHRHNQLVIVLPILFFLIMAFLRLVRLRHIRIATKNKHAKTIAATKNGDLFCIWNYDGNIAYEDIIRATQDFDMRYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVPAFDESFRNEVKVLSEIKHRHIVKLHGFCLHRRIMFLIYEYMERGSLFSVLFDDVEAMELDWKKRVNIVKGTAHALSYLHHDFTPPIVHRDISASNVLLNLDWEPSVSDFGTARFLSFDSSYRTIVAGTIGYIAPELAYSMVVSERCDVYSFGVVALETLVGSHPKEILSSLQSASTENGITLCEILDQRLPQPTMSVLMEIVSVAIVAFACLNANPCSRPTMKSVSQCFLTQLTPLDIPLREISLQQLMSQELRHYLNL* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2077 874 ProSiteProfiles Protein kinase domain profile. 577 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2077 874 ProSitePatterns Protein kinases ATP-binding region signature. 583 606 IPR017441 GO:0005524
Gso18g2077 874 ProSiteProfiles Leucine-rich repeat profile. 278 300 IPR001611 GO:0005515
Gso18g2077 874 Gene3D Ribonuclease Inhibitor 25 155 IPR032675 -
Gso18g2077 874 Gene3D Ribonuclease Inhibitor 156 203 IPR032675 -
Gso18g2077 874 PRINTS Leucine-rich repeat signature 114 127 - -
Gso18g2077 874 PRINTS Leucine-rich repeat signature 205 218 - -
Gso18g2077 874 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 870 - -
Gso18g2077 874 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 23 235 - -
Gso18g2077 874 SMART LRR_sd22_2 347 368 - -
Gso18g2077 874 SMART LRR_sd22_2 252 278 - -
Gso18g2077 874 SMART LRR_sd22_2 205 231 - -
Gso18g2077 874 SMART LRR_sd22_2 158 184 - -
Gso18g2077 874 SMART LRR_sd22_2 299 325 - -
Gso18g2077 874 SMART LRR_sd22_2 111 137 - -
Gso18g2077 874 Pfam Leucine rich repeat 89 148 IPR001611 GO:0005515
Gso18g2077 874 Pfam Leucine rich repeat 299 336 IPR001611 GO:0005515
Gso18g2077 874 Gene3D Transferase(Phosphotransferase) domain 1 656 850 - -
Gso18g2077 874 Gene3D Ribonuclease Inhibitor 204 477 IPR032675 -
Gso18g2077 874 Pfam Leucine Rich Repeat 254 276 IPR001611 GO:0005515
Gso18g2077 874 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515
Gso18g2077 874 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515
Gso18g2077 874 ProSitePatterns Tyrosine protein kinases specific active-site signature. 701 713 IPR008266 GO:0004672|GO:0006468
Gso18g2077 874 ProSiteProfiles Leucine-rich repeat profile. 137 159 IPR001611 GO:0005515
Gso18g2077 874 Pfam Leucine Rich repeat 421 435 IPR001611 GO:0005515
Gso18g2077 874 Pfam Protein kinase domain 583 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2077 874 SUPERFAMILY Protein kinase-like (PK-like) 563 843 IPR011009 -
Gso18g2077 874 Gene3D Phosphorylase Kinase; domain 1 536 655 - -
Gso18g2077 874 ProSiteProfiles Leucine-rich repeat profile. 113 136 IPR001611 GO:0005515
Gso18g2077 874 ProSiteProfiles Leucine-rich repeat profile. 184 206 IPR001611 GO:0005515
Gso18g2077 874 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 222 870 - -
Gso18g2077 874 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 235 - -
Gso18g2077 874 SMART LRR_typ_2 158 182 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 420 444 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 371 396 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 252 276 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 205 229 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 111 135 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 299 322 IPR003591 -
Gso18g2077 874 SMART LRR_typ_2 323 347 IPR003591 -
Gso18g2077 874 SUPERFAMILY L domain-like 51 365 - -
Gso18g2077 874 SUPERFAMILY Outer arm dynein light chain 1 316 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2077 Gso-Chr18 53741913 53745337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2077 89 749 Receptor kinase-like Gene Family AT4G08850 37.328 2.61e-135 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g2077 Pkinase 7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2077 - - gmx:102666098 1712.2