Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2076 ATGCAGCTTTTTGTTTTCAATTTCTATGGAACCACCTTTCTTGTTATTTACGGTATGGTTTTTATTATGGGGATTGTATTGGAATTAGGAGCCGCCCCTGCTCCTGCACCTGCACCATTGCTGCCTCCATCGGAAGCAAATGCTATACTCAACAGTGGATGGTGGAATCTATCACAGTTAGATTCACACAATATCTGTTCATGGTGTGGTATAGGTTGCAACGTCGCTGGAAGTATAACTGTCATCGGATGTCCATGTTATACACCGGGTACACCGGGGATTCGATTAGCAACACTAAACCTCTCTGTTTTCAAGAATTTAGAAATGCTTGATGTCTCAAACTGTGGACTACAAGGGACTATCCCATCTGATATTGGTAATCTCCCTAAACTCACTTATCTTGATTTGTCCGATAATTCTCTTCATGGTGAAATACCTCGTGAGTTGTTATTTCTAAGAAATCTAACTCGGTTAGATTTGTCCAATAATTCTCTTCATGGTGAAATACCTCCTTCATTGGCAAATCTTACCCAATTAGAGAGCCTAATCATATCTCACAACAAGTTTCAAGGCTCAATTCCTGAGTTGTCGTTTCCAAAATATCTTACTGTCTTAGATTTGTCCTATAATTTGCTTAATGGTGAGATACCTTCCGCACTGGCAAATCTTATCCAATTAGAGAGCCTAATCCTTTCTAACAACAAATTTCAAGGCCCCATTCCTGGTGAGTTGTTGTTTCTAAAAAATCTTGCTTGGTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACCCAGCTAGAGAACCTAGACCTTTCAAACAACAAATTTCAAGGCCCCATTCCTGGTGAGTTGTTGTTTCTACAAGATCTTAATTGGTTAGATTTGTCCTATAATTCACTTGATGATGAGATACCTCCTGCACTGATAAATCTTACCCAGTTAGAGAGGCTAGACCTTTCAAACAACAAATTTCAAGGCCCCATTCCAGCGGAGCTTGGACATTTGCATCATGTCAGCGTGAACCTTTCATTCAATAATTTGAAGGGTCCCATTCCATATGGTTTAAGTGAGATTCAGCTAATAGGGAACAAGGATGTATGTAGCGATGATTCCTATTACATAGATAAATATCAATTCAAGCGTTGTTCTGCCCAAGACAACGAAGTAAGGCTCAATCAGCAGCTGGTCATAGTTCTCCCTATCCTCATTTTTCTAATCATGCTCTTCTTACTACTCGTGTGTCTGAGGCACACTCGCATTGCAACTAAGAACAAACATGCAAACACAACGGCAGCCACTAAGAATGGGGACTTATTCTGTATATGGAATTATGATGGAAACATAGCCTATGAAGACATCATTAGAGCAACCCAAGACTTTGACATGAGATATTGTATTGGAACAGGTGCCTATGGGAGCGTTTATAGGGCACAATTACCAAGTGGCAAGATTGTTGCCGTGAAAAAACTCCACGGATTTGAAGCAGAGGTGGCAGCTTTTGATGAGAGTTTCAGAAATGAGGTCAAAGTATTGTCAGAAATAAAGCATCGACATATTGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATATATGAGTACATGGAGAGAGGCAGCTTGTTTTCAGTGTTGTTTGATGATGTGGAAGCCATGGAATTGGATTGGAAAAAGAGGGTTAACATTGTGAAAGGCACTGCACATGCTCTGTCCTATCTTCATCATGACTTCACTCCTCCAATTGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTCAGACTGGGAGCCCCGTGTTTCAGACTTTGGCACAGCCCGATTCCTTAGCTTTGATTCATCCTATCGAACTATAGTTGCTGGAACCATTGGGTACATAGCCCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAGGTGTGATGTGTACAGCTTTGGAGTGGTGGCACTCGAAACTTTGGTGGGATCGCATCCTAAGGAAATACTCTCATCACTTCAATCAGCATCTACTGAGAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGCCAACAATGTCAGTTTTAATGGAAATAGTTAGTGTTGCCATAGTTGCATTTGCGTGCTTAAATGCCAATCCTTGCTCTCGCCCAACAATGAAATCGGTCTCTCAATGTTTTCTTACTCAGCTTACACCATTAGACATTCCTTTGCGTGAGATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCATTATTTAAATTTGTGA 2298 0.4095 MQLFVFNFYGTTFLVIYGMVFIMGIVLELGAAPAPAPAPLLPPSEANAILNSGWWNLSQLDSHNICSWCGIGCNVAGSITVIGCPCYTPGTPGIRLATLNLSVFKNLEMLDVSNCGLQGTIPSDIGNLPKLTYLDLSDNSLHGEIPRELLFLRNLTRLDLSNNSLHGEIPPSLANLTQLESLIISHNKFQGSIPELSFPKYLTVLDLSYNLLNGEIPSALANLIQLESLILSNNKFQGPIPGELLFLKNLAWLDLSYNSLDGEIPPALANLTQLENLDLSNNKFQGPIPGELLFLQDLNWLDLSYNSLDDEIPPALINLTQLERLDLSNNKFQGPIPAELGHLHHVSVNLSFNNLKGPIPYGLSEIQLIGNKDVCSDDSYYIDKYQFKRCSAQDNEVRLNQQLVIVLPILIFLIMLFLLLVCLRHTRIATKNKHANTTAATKNGDLFCIWNYDGNIAYEDIIRATQDFDMRYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVAAFDESFRNEVKVLSEIKHRHIVKLHGFCLHRRIMFLIYEYMERGSLFSVLFDDVEAMELDWKKRVNIVKGTAHALSYLHHDFTPPIVHRDISASNVLLNSDWEPRVSDFGTARFLSFDSSYRTIVAGTIGYIAPELAYSMVVSERCDVYSFGVVALETLVGSHPKEILSSLQSASTENGITLCEILDQRLPQPTMSVLMEIVSVAIVAFACLNANPCSRPTMKSVSQCFLTQLTPLDIPLREISLQQLMSQELRHYLNL* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2076 765 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Gso18g2076 765 Pfam Leucine rich repeat 178 236 IPR001611 GO:0005515
Gso18g2076 765 Pfam Leucine rich repeat 247 284 IPR001611 GO:0005515
Gso18g2076 765 Gene3D Phosphorylase Kinase; domain 1 427 546 - -
Gso18g2076 765 Pfam Protein kinase domain 474 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2076 765 SUPERFAMILY L domain-like 105 376 - -
Gso18g2076 765 ProSitePatterns Tyrosine protein kinases specific active-site signature. 592 604 IPR008266 GO:0004672|GO:0006468
Gso18g2076 765 Gene3D Transferase(Phosphotransferase) domain 1 547 741 - -
Gso18g2076 765 Gene3D Ribonuclease Inhibitor 265 380 IPR032675 -
Gso18g2076 765 Gene3D Ribonuclease Inhibitor 44 196 IPR032675 -
Gso18g2076 765 ProSiteProfiles Leucine-rich repeat profile. 154 177 IPR001611 GO:0005515
Gso18g2076 765 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 269 761 - -
Gso18g2076 765 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 243 323 - -
Gso18g2076 765 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 43 276 - -
Gso18g2076 765 SMART LRR_typ_2 128 151 IPR003591 -
Gso18g2076 765 SMART LRR_typ_2 319 343 IPR003591 -
Gso18g2076 765 SMART LRR_typ_2 152 175 IPR003591 -
Gso18g2076 765 SMART LRR_typ_2 271 295 IPR003591 -
Gso18g2076 765 SMART LRR_typ_2 176 200 IPR003591 -
Gso18g2076 765 SMART LRR_typ_2 247 270 IPR003591 -
Gso18g2076 765 ProSitePatterns Protein kinases ATP-binding region signature. 474 497 IPR017441 GO:0005524
Gso18g2076 765 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515
Gso18g2076 765 ProSiteProfiles Protein kinase domain profile. 468 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2076 765 SUPERFAMILY Protein kinase-like (PK-like) 453 734 IPR011009 -
Gso18g2076 765 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 43 276 - -
Gso18g2076 765 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 269 761 - -
Gso18g2076 765 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 243 323 - -
Gso18g2076 765 PRINTS Leucine-rich repeat signature 131 144 - -
Gso18g2076 765 PRINTS Leucine-rich repeat signature 152 165 - -
Gso18g2076 765 Gene3D Ribonuclease Inhibitor 197 264 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2076 Gso-Chr18 53734123 53736822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2076 107 640 Receptor kinase-like Gene Family AT4G08850 41.016 1.01e-123 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g2076 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2076 - - gmx:100778268 1412.9