Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2075 ATGCAGCTTTTTGTTTTCAATTTTTATGGAACCACCTTTCTTGTTATTTACGGTATGGTTATTATTATGGGGATTGTATTGGAGTTAGGAGCCACCCCTGCTCCTGCTCCTGCACCTGCACCATTGCTGCCTCCATCGGAAGCAAATGCTATACTCAACAGTGGATGGTGGAATCTATCACAGTTAGATTCACACAATATCTGTTCATGGTATGGTATAGATTGCAACGTCGCTGGAAGTATAACTGGCATCAGATGTCCATTGGGTACACCGGGGATTCGATTAGCAACACTAAACCTCTCTGTTTTCAAGAATTTAGAATGGCTTGAGGTCTCAGGCTGTGGACTACAAGGGACTATACCACCTGATATTGGTAATCTCCCTAAACTCACTCATCTCCGTTTGTCCTATAATTCTCTTCATGGTGAAATACCTCCTTCATTGGCAAATCTTACCCAATTAGAGAGACTAATCCTTTCTAACAACAAATTTCAAGGCTCCATTCCTCGTGAGTTGTTATTTCTAAGAAATCTAACTTGGTTAGATTTGTCCTATAATTCACTTGATGGTAAGATACCTCCTGCATTGGCAAATCTTACCCAATTAAAGATTCTTCACCTTTCTAACAACAAATTTCAAGGCCCCATTCCTGGTGAGTTGTTTCTAAAAAATCTTATTTGTTTAGATTTGTCCTATAATTCACTTAATGGTGAGATACCTCCTCCACTGACAAATCTTTCCCAATTAGAGAGCCTAATCCTTTCTAATAACAACATTCAAGGCTCCATTCAGAATTTGGTTTTCTCTAAAAGTCTTACTTGGTTAGATCTATCAGCCAACAAAATCAGTGGGACCTTGCCCGTGCCACAGACAAATTTCCCAAGTTTAAAATTACTTAACATTTCCCATAATCTACTTTTTGGTTCCTTAAAACCCTTGTCAGTAGGAAACCAATTAGCACCGCTAACTACTATTTACCTCAGAAACAACTCAATTAGTGGAAAAATTCCTCTAGAGCTTGGATATTTCTTAAATACTCTGGATCTAAGCTACAATAATCTTACCGGAACGGTTCCTCTATCTATGGAAAATGTCTATGACCTGAACCTTTCATTCAATAATTTGAATGGTCCCATTCCATATGGTTTAAGTGAGAGTCGGCTAATAGGGAACAAGGGTGTATGTAGCGACGATTTATATCACATAGATGAATATCAATTCAAGCGTTGTTCTGTCAAAGACAACAAAGTAAGGCTCAAGCAGCTGGTCATAGTTCTCCCTATCCTCATTTTTCTAATCATGGCCTTCCTACTACTCGTGCGGCTAAGGCATATTCGCATTGCAACTAAGAACAAACATGCAAAGACAATTGCAGCCACTAAGAATGGGGACTTGTTCTGTATATGGAATTATGATGGAAGCATAGCCTATGACGACATCATTACAGCAACCCAAGACTTTGACATGAGATATTGTATTGGAACAGGTGCCTATGGGAGCGTTTATAGGGCACAATTACCAAGTAGCAAGATTGTTGCCGTGAAAAAACTCCACGGATTTGAAGCAGAGGTGCCAGCTTTTGATGAGAGTTTCAAAAATGAGGTCAAAGTATTAACAGAAATAAAGCATCGACATGTTGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAACCATGTTTTTGATATATGAGTACATGGAGAGAGGCAGCTTGTTTTCAGTGTTGTTTGATGATGTGGAAGCCATGGAATTGGATTGGAAAAAGAGGGTTAACATTGTGAAAGGAACTGCACATGCTCTGTCCTATCTTCATCATGACTTCACTCCTCCAATTGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTCAGACTGGGAGCCCAGTATTTCAGACTTTGGCACAGCCCGATTCCTTAGCTTCGATTCATCCCATCCAACTATAGTTGCTGGAACCATTGGGTACATAGCCCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAGGTGTGATGTGTACAGCTTTGGAGTGGTGGCACTCGAAACTTTGGTGGGATCGCATCCTAAGGAAATACTCTCATCACTTCAATCAGCATCTACTGAGAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGCCAACAATGTCAGTTTTAATGGAAATAGTTCGTGTTGCCATAGTTGCATTTGCGTGCTTAAATGCCAATCCTTGCTCTCGCCCAACAATGAAATCGGTCTCTCAATGTTTTCTTACTCAGCTTACACCATTAAACATTCCTTTGCGTGAGATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCATTATTTAAATTTGTGA 2355 0.4025 MQLFVFNFYGTTFLVIYGMVIIMGIVLELGATPAPAPAPAPLLPPSEANAILNSGWWNLSQLDSHNICSWYGIDCNVAGSITGIRCPLGTPGIRLATLNLSVFKNLEWLEVSGCGLQGTIPPDIGNLPKLTHLRLSYNSLHGEIPPSLANLTQLERLILSNNKFQGSIPRELLFLRNLTWLDLSYNSLDGKIPPALANLTQLKILHLSNNKFQGPIPGELFLKNLICLDLSYNSLNGEIPPPLTNLSQLESLILSNNNIQGSIQNLVFSKSLTWLDLSANKISGTLPVPQTNFPSLKLLNISHNLLFGSLKPLSVGNQLAPLTTIYLRNNSISGKIPLELGYFLNTLDLSYNNLTGTVPLSMENVYDLNLSFNNLNGPIPYGLSESRLIGNKGVCSDDLYHIDEYQFKRCSVKDNKVRLKQLVIVLPILIFLIMAFLLLVRLRHIRIATKNKHAKTIAATKNGDLFCIWNYDGSIAYDDIITATQDFDMRYCIGTGAYGSVYRAQLPSSKIVAVKKLHGFEAEVPAFDESFKNEVKVLTEIKHRHVVKLHGFCLHRRTMFLIYEYMERGSLFSVLFDDVEAMELDWKKRVNIVKGTAHALSYLHHDFTPPIVHRDISASNVLLNSDWEPSISDFGTARFLSFDSSHPTIVAGTIGYIAPELAYSMVVSERCDVYSFGVVALETLVGSHPKEILSSLQSASTENGITLCEILDQRLPQPTMSVLMEIVRVAIVAFACLNANPCSRPTMKSVSQCFLTQLTPLNIPLREISLQQLMSQELRHYLNL* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2075 784 SMART LRR_typ_2 199 223 IPR003591 -
Gso18g2075 784 SMART LRR_typ_2 175 198 IPR003591 -
Gso18g2075 784 SMART LRR_typ_2 246 270 IPR003591 -
Gso18g2075 784 SMART LRR_typ_2 127 150 IPR003591 -
Gso18g2075 784 SMART LRR_typ_2 151 174 IPR003591 -
Gso18g2075 784 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Gso18g2075 784 Pfam Leucine rich repeat 172 212 IPR001611 GO:0005515
Gso18g2075 784 Gene3D Transferase(Phosphotransferase) domain 1 566 760 - -
Gso18g2075 784 ProSiteProfiles Leucine-rich repeat profile. 248 270 IPR001611 GO:0005515
Gso18g2075 784 ProSiteProfiles Protein kinase domain profile. 487 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2075 784 Gene3D Ribonuclease Inhibitor 291 401 IPR032675 -
Gso18g2075 784 Gene3D Ribonuclease Inhibitor 192 290 IPR032675 -
Gso18g2075 784 Gene3D Ribonuclease Inhibitor 46 191 IPR032675 -
Gso18g2075 784 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 45 780 - -
Gso18g2075 784 SUPERFAMILY L domain-like 60 383 - -
Gso18g2075 784 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 45 780 - -
Gso18g2075 784 ProSitePatterns Protein kinases ATP-binding region signature. 493 516 IPR017441 GO:0005524
Gso18g2075 784 ProSitePatterns Tyrosine protein kinases specific active-site signature. 611 623 IPR008266 GO:0004672|GO:0006468
Gso18g2075 784 Gene3D Phosphorylase Kinase; domain 1 444 565 - -
Gso18g2075 784 Pfam Protein kinase domain 493 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2075 784 SUPERFAMILY Protein kinase-like (PK-like) 472 753 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2075 Gso-Chr18 53717866 53721123 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2075 106 659 Receptor kinase-like Gene Family AT4G08850 39.967 3.08e-116 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g2075 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2075 - - gmx:102666504 1514.21