Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2072 ATGAAGTTTTTTGTTATTTGCAGTGTGGTTATTATGGGGATAACATTGGACTTAGAAGCCGTGCCTACACCGTCGCAGCTTCATTTGGAAGAAAATGCTATACTCAACAGTGGATGGTGGAATACATCTGAGTCAGAAGATTCACACGATATCTGTTCATGGTATGGTATATCTTGCAACGATGTTGGAAGCATAACTAGAATCAAATATCAATTTTATACACCAACAGGGATTCCATTAGCAACACTAAACCTCTCCGTTTTCAAGAATTTAGAATGGTTTGAGGTCGCAGGCAGTGGATTACAAGGGACTATACCACCTGATATTGGTAATCTCCCTAAACTCACTCATCTCGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCTTGCACTGGCAAATCTTTCCCAATTAGAGAGACTAGACCTTTCAAAAAATGAACTTCAAGGCTCCATTCCTCCTGAGTTGTTGTTTCTAAAAAGTCTTACTTGGTTAGATTTGTCCTATAATTCACTTGATGGTGAAATACCTCCGGCATTGGCAAATCTTACCCAATTAGAGAGGCTAGACCTTACAAAAAACAAATTTCAAGGCTCCATTCCTCCTGAGTTGTTGTTTCTAAAAAGTCTTACTAGGTTATATTTGTCAAATAATTCACTTGATGGTGAAATACCTCCTGCACTGACAAATCTTACCCAGTTAAAGACTCTAGGACTTTCAAGCAACAAATTTCAAGGCTCCATTCCTCCTGAGTTGTTGTTTCTAAAAAGTCTTACTTGGTTAGATTTGTCCAATAATTTACTTGATGGTGAGATACCTCCTGCACTGACAAATCTTACCCAGTTAGAGATTCTAGGTCTTTCAAACAACAAATTTCAAGGCTCCATTCCTTCTGAGTTGTTGTTTCTAAAAAATCTTATTGTCTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGCACGGGCAAATCTTACCCTGTTAGAGAGACTAGACCTTTCTCACAACAAATTTCAAGGCCCCATTCCTGGTGAGTTGTTGTTTCTAAAAAATCTTACTTGGTTAGATTTGTCCTATAATTTACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACCCAGTTAGAGATGCTAGACCTTTCAAACAACAAATTTCAAGGTCCCATTCCTCGTGAGTTGTTGTTTCTAAAAAATCTTACTTGGTTAGATTTATCCTATAATTCACTTGATGGTGAGATACCTCCTGCACTGACAAATCTTACCCAATTAAAGAGCCTAACCATTTCTAATAATAAATTTCAAGGCCCCATTCCTGGTGAGTTGTTGTTTCTAAAAAATCTTACTTGGTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGCACTGACAAATCTTACCCAATTAGAGAGCCTAATCATATCTCACAACAACATTCAAGGCTCAATTCCTGAGTTGTTGTTTCTAAAAAATCTCACTATCTTAGATTTGTCCAATAATTCACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACCCAATTAGAGAGCCTAATCATATCTGACAACAACATTCAAGGCTCAATTCCTGAGTTGTTATTTCTAAAAAATCTCACTGTCTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCTGCACTGGCAAATCTTACGCAATTACAAAGACTAATTATCTCTTACAACAACATTCAAGGCCCCATTCCTGGTGAGTTGTGGTTTCTAAAAAATCTTACTGTCTTAGATTTGTCCTATAATTCACTTGATGGTGAGATACCTCCAGCACTGACAAATCTTACCCAATTAGAGAACCTAATCATATCTCACAACAACATTCAAGGTTCAATTCCGCAGAATTTGGTTTTCTTGAAAAGTCTTACTTTGTTAGATCTATCAGCCAACAAAATCAGTGGGACCTTGCCCTTGTCACAGACAAATTTCCCACGTTTAATATTCCTTGACATTTCCGACAATCTACTTTCTGGTTCCTTAAAACCCTTGTCAGTAGGAAACCATGCACAGCTAACTAGTATTTACCTCAGAAACAACTCAATTAGTGGAAAAATTCCACCAGAGCTTGGATATTTGCCTTTCTTAACTACTCTGGATCTAAGCTACAATAATCTTACCGGAACAGTTCCTCTATCTATGCAAAATGTCTTTAACTTGAGGCTTTCATTCAACAATTTGAAGGGTCCCATTCCATATGGTTTCAGTGGGAGTGAGCTAATAGGGAACAAGGGTGTATGTAGCGATGATTTCTATTACATAGCTACACATCAATTCAAGCGTTGTTCAGCCCAAGACAACTTAGTAGTCATGGCCGGCAGCAACAAAGTAAGGCACAAGCACAATCAGCTGGTCATAGTTCTCCCTATCCTCATTTTTCTAATCATGCTCTTCTTACTATTCGTGTGTCTGAGGCACAATCGCATTGCAACTAAGAACAAACATGCAAACACAACAGCAGCCACTAAGAATGGGGACTTGTTCTGTATATGGAATTATGATGGAAGCATAGCCTATGAAGACATCATTACAGCAACCGAAGACTTTGACATGAGATATTGTATTGGAACAGGTGCCTATGGGAGCGTTTATAGGGCACAGTTACCAAGTGGCAAGATTGTTGCCGTGAAAAAACTCCACGGATTTGAAGCAGAGGTGGCAGCTTTTGATGAGAGTTTCAGAAATGAGGTCAAAGTATTATCAGAAATAAAGCATCGACATGTTGTGAAGCTCCATGGATTCTGCTTGCACAGAAGAATCATGTTTTTGATATATGAGTACATGGAGAGAGGCAGCTTGTTTTCAGTGTTGTTTGATGATGTGGAAGCCATGGAATTGGATTGGAAAAAGAGGGTTAACATTGTGAAAGGCACTGCACATGCTCTGTCCTATCTTCATCATGACTTCACTCCTCCAATTGTGCATAGAGACATATCAGCCAGCAATGTCTTGCTTAACTCAGACTGGGAGCCCAGTGTTTCAGACTTTGGCACAGCCCGATTCCTTAGCATTGATTCATCCTATCGAACTATAGTTGCCGGAACCATTGGGTACATAGCCCCAGAGCTTGCATATAGTATGGTTGTGAGTGAAAGGTGTGATGTGTACAGCTTTGGAGTGGTGGCACTCGAAACTTTGGTGGGATCGCATCCTAAGGAAATACTCTCATCACTTCAATCAGCATCTACTGAGAATGGCATCACATTATGTGAAATATTGGACCAACGCCTCCCACAGGCAACAATGTCAGTTTTAATGGAAATAGTTAGTGTTGCCATAGTTGCATTTGCGTGCTTAAATGCCAATCCTTGCTCTCGCCCAACAATGAAATCGGTCTCTCAATGTTTTCTTACTCAGCTTACACCATTAGACATTCCTTTGCGTGAGATTTCATTGCAGCAGCTCATGAGTCAAGAACTCAGGCATTATTTAAATTTGTGA 3495 0.3928 MKFFVICSVVIMGITLDLEAVPTPSQLHLEENAILNSGWWNTSESEDSHDICSWYGISCNDVGSITRIKYQFYTPTGIPLATLNLSVFKNLEWFEVAGSGLQGTIPPDIGNLPKLTHLDLSYNSLDGEIPLALANLSQLERLDLSKNELQGSIPPELLFLKSLTWLDLSYNSLDGEIPPALANLTQLERLDLTKNKFQGSIPPELLFLKSLTRLYLSNNSLDGEIPPALTNLTQLKTLGLSSNKFQGSIPPELLFLKSLTWLDLSNNLLDGEIPPALTNLTQLEILGLSNNKFQGSIPSELLFLKNLIVLDLSYNSLDGEIPPARANLTLLERLDLSHNKFQGPIPGELLFLKNLTWLDLSYNLLDGEIPPALANLTQLEMLDLSNNKFQGPIPRELLFLKNLTWLDLSYNSLDGEIPPALTNLTQLKSLTISNNKFQGPIPGELLFLKNLTWLDLSYNSLDGEIPPALTNLTQLESLIISHNNIQGSIPELLFLKNLTILDLSNNSLDGEIPPALANLTQLESLIISDNNIQGSIPELLFLKNLTVLDLSYNSLDGEIPPALANLTQLQRLIISYNNIQGPIPGELWFLKNLTVLDLSYNSLDGEIPPALTNLTQLENLIISHNNIQGSIPQNLVFLKSLTLLDLSANKISGTLPLSQTNFPRLIFLDISDNLLSGSLKPLSVGNHAQLTSIYLRNNSISGKIPPELGYLPFLTTLDLSYNNLTGTVPLSMQNVFNLRLSFNNLKGPIPYGFSGSELIGNKGVCSDDFYYIATHQFKRCSAQDNLVVMAGSNKVRHKHNQLVIVLPILIFLIMLFLLFVCLRHNRIATKNKHANTTAATKNGDLFCIWNYDGSIAYEDIITATEDFDMRYCIGTGAYGSVYRAQLPSGKIVAVKKLHGFEAEVAAFDESFRNEVKVLSEIKHRHVVKLHGFCLHRRIMFLIYEYMERGSLFSVLFDDVEAMELDWKKRVNIVKGTAHALSYLHHDFTPPIVHRDISASNVLLNSDWEPSVSDFGTARFLSIDSSYRTIVAGTIGYIAPELAYSMVVSERCDVYSFGVVALETLVGSHPKEILSSLQSASTENGITLCEILDQRLPQATMSVLMEIVSVAIVAFACLNANPCSRPTMKSVSQCFLTQLTPLDIPLREISLQQLMSQELRHYLNL* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2072 1164 Pfam Leucine Rich Repeat 450 472 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine Rich Repeat 497 519 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine Rich Repeat 592 614 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine Rich Repeat 162 184 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine Rich Repeat 210 232 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine Rich Repeat 402 424 IPR001611 GO:0005515
Gso18g2072 1164 ProSiteProfiles Protein kinase domain profile. 867 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2072 1164 Gene3D Ribonuclease Inhibitor 446 771 IPR032675 -
Gso18g2072 1164 SUPERFAMILY RNI-like 262 604 - -
Gso18g2072 1164 SMART LRR_sd22_2 352 378 - -
Gso18g2072 1164 SMART LRR_sd22_2 542 568 - -
Gso18g2072 1164 SMART LRR_sd22_2 112 138 - -
Gso18g2072 1164 SMART LRR_sd22_2 400 426 - -
Gso18g2072 1164 SMART LRR_sd22_2 160 186 - -
Gso18g2072 1164 SMART LRR_sd22_2 495 521 - -
Gso18g2072 1164 SMART LRR_sd22_2 448 474 - -
Gso18g2072 1164 SMART LRR_sd22_2 256 282 - -
Gso18g2072 1164 SMART LRR_sd22_2 304 336 - -
Gso18g2072 1164 SMART LRR_sd22_2 208 234 - -
Gso18g2072 1164 SMART LRR_sd22_2 590 616 - -
Gso18g2072 1164 SMART LRR_sd22_2 638 659 - -
Gso18g2072 1164 ProSiteProfiles Leucine-rich repeat profile. 521 543 IPR001611 GO:0005515
Gso18g2072 1164 ProSiteProfiles Leucine-rich repeat profile. 497 520 IPR001611 GO:0005515
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 465 571 - -
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 512 1160 - -
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 225 329 - -
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 23 236 - -
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 417 524 - -
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 368 477 - -
Gso18g2072 1164 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 321 429 - -
Gso18g2072 1164 ProSitePatterns Protein kinases ATP-binding region signature. 873 896 IPR017441 GO:0005524
Gso18g2072 1164 ProSitePatterns Tyrosine protein kinases specific active-site signature. 991 1003 IPR008266 GO:0004672|GO:0006468
Gso18g2072 1164 Gene3D Transferase(Phosphotransferase) domain 1 946 1140 - -
Gso18g2072 1164 Pfam Leucine Rich repeat 712 726 IPR001611 GO:0005515
Gso18g2072 1164 Gene3D Phosphorylase Kinase; domain 1 827 945 - -
Gso18g2072 1164 SMART LRR_typ_2 208 232 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 542 566 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 495 519 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 352 375 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 160 184 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 400 424 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 711 738 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 256 279 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 638 669 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 136 159 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 376 399 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 112 135 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 590 614 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 448 472 IPR003591 -
Gso18g2072 1164 SMART LRR_typ_2 280 304 IPR003591 -
Gso18g2072 1164 ProSiteProfiles Leucine-rich repeat profile. 474 496 IPR001611 GO:0005515
Gso18g2072 1164 Gene3D Ribonuclease Inhibitor 25 155 IPR032675 -
Gso18g2072 1164 Gene3D Ribonuclease Inhibitor 347 445 IPR032675 -
Gso18g2072 1164 Gene3D Ribonuclease Inhibitor 249 346 IPR032675 -
Gso18g2072 1164 PRINTS Leucine-rich repeat signature 498 511 - -
Gso18g2072 1164 PRINTS Leucine-rich repeat signature 542 555 - -
Gso18g2072 1164 Pfam Leucine rich repeat 109 149 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine rich repeat 352 389 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine rich repeat 521 579 IPR001611 GO:0005515
Gso18g2072 1164 Pfam Leucine rich repeat 282 341 IPR001611 GO:0005515
Gso18g2072 1164 SUPERFAMILY Protein kinase-like (PK-like) 851 1133 IPR011009 -
Gso18g2072 1164 SUPERFAMILY L domain-like 45 318 - -
Gso18g2072 1164 Gene3D Ribonuclease Inhibitor 156 248 IPR032675 -
Gso18g2072 1164 SUPERFAMILY L domain-like 540 755 - -
Gso18g2072 1164 Pfam Protein kinase domain 873 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 23 236 - -
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 368 477 - -
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 321 429 - -
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 225 329 - -
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 417 524 - -
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 465 571 - -
Gso18g2072 1164 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 512 1160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2072 Gso-Chr18 53700494 53726945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2072 52 1130 Receptor kinase-like Gene Family AT5G07280 36.324 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g2072 Pkinase 3.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2072 - - gsj:114396585 2279.6