Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2070 ATGGGTGAGAAAGATGATGAGTTTGGGTTGAGTTTGAGTTTGAGTTTGGGGGGAGTGAATCAACAACAACAACCCCCTTCTTTGAATCATATGCACCAGCCTCAACAACAACAACCTGTTCCCATGAATCACAATAAGACTCTCTTTGGTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATATGGTACGAGGAATCGACGTTAATTCGGCGGCGGAGTACGATGGCGTTTCCTCGCCGAACAGCGCCGTCTCGAGCGTGAGCGGCGGCGGCAAGCAGAGCGAGAGGGACGACGATAATGCCGCCGCCGTGGCTGGTGAGAGGACCTCGTGCTCGCGAGGGAGCGACGACGATGACGGTGGTGGCAGCGACGCCGCGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCACAACACCCTGAATCCGAAACGGAAGCAAGCGTTGGCAGAGGAGTTGAATCTGAAGCCCAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAAATGCTGTGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAGGAGGTTCAAGAGCTTAGGGCATTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTACTCACTCCTCTGCATCCTCCTCCCCTGCTACCATCCACTCAACAGTGGCGGCGGCCACCTCTAGCAATTGCAAACTGCTTGGTGCAAACATCCGGCGGCCGGTGCCCGTCAACACTTGGCCATTTGAAGGCCCAATTCCTCGGCCATAA 870 0.5172 MGEKDDEFGLSLSLSLGGVNQQQQPPSLNHMHQPQQQQPVPMNHNKTLFGDLFQLPDRSSDMVRGIDVNSAAEYDGVSSPNSAVSSVSGGGKQSERDDDNAAAVAGERTSCSRGSDDDDGGGSDAARKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERTHSSASSSPATIHSTVAAATSSNCKLLGANIRRPVPVNTWPFEGPIPRP* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2070 289 MobiDBLite consensus disorder prediction 111 134 - -
Gso18g2070 289 MobiDBLite consensus disorder prediction 74 91 - -
Gso18g2070 289 MobiDBLite consensus disorder prediction 1 47 - -
Gso18g2070 289 Pfam HD-ZIP protein N terminus 1 97 IPR006712 GO:0005634
Gso18g2070 289 MobiDBLite consensus disorder prediction 71 134 - -
Gso18g2070 289 MobiDBLite consensus disorder prediction 14 44 - -
Gso18g2070 289 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Gso18g2070 289 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Gso18g2070 289 Coils Coil 196 216 - -
Gso18g2070 289 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Gso18g2070 289 SUPERFAMILY Homeodomain-like 114 184 IPR009057 -
Gso18g2070 289 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Gso18g2070 289 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 4 281 - -
Gso18g2070 289 SMART HOX_1 125 187 IPR001356 GO:0003677
Gso18g2070 289 PANTHER - 4 281 - -
Gso18g2070 289 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Gso18g2070 289 Gene3D - 120 188 - -
Gso18g2070 289 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2070 Gso-Chr18 53662724 53666676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2070 28 240 Homeobox Transcription Factor Family AT3G60390 60.331 2.22e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso18g2070 HD-ZIP_N 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2070 K09338 - gmx:100819624 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2070 18 53662724 53666676 Gso9g1984 9 44262559 44266182 GST
Gso7g0954 7 11722188 11725996 Gso18g2070 18 53662724 53666676 PCT
Gso3g0986 3 34042030 34045814 Gso18g2070 18 53662724 53666676 PCT