Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2057 ATGATAAATTCGGGTGTTAATTATTTAATCGTGAAGCTGTTCGGAGGATCTCTGGCTATCGACAGCTACACTATGGCGACTAATCTTCCTGCAACGAAGTCCACCACGACGACGTCGTCTCAGGAGAAACGACACCGTTCGATCTTCGAAGTTCCACGGAACTTCTTCGACTCTTGTCGTCTTCTCCCTTCTCCTCACTCATCCGTTTCCGACCACCACAGCGTAGGCCAAACCCAAATCATCGAAACATCCTCAAACGATGACTTCGTTTTGGATGCCCCTCAAAACGCCGTCGTTTCCGCGCCTAGGTGGACCTGCAATACCTGCAAGACTCAATTCGATTCCCTTCAGGACCAGCGTTCCCATTTCAAATCCGACATTCATCGATTCAATGTGAAGCTGACAATTGCTGGAAAGAATATTGTGAAGGAAGAAGATTTTGAGTTTCTAACATCTGAATTTGTTAAAGACTATGATGTGTCAAGTATATCAGGATCAGAAAGTGACGATGATAGTGAAACCGATTCTCAAAGTCAAAGTGCATTGCATGACAAATTGAGCGAAAGTTTTAAACATAAACTATTCTTCCGTCTTCAGACAGGGCAGAGAGTTTCTGTCTGGAAGTGCTTGATTATGAATGTGACTGAAAATGTATTGTATGATAATGAAAAGGCAGAGAATGAAGTGGTTGAGAAGTTGAAATCTTTGACTGCTGAGCCCAGAGACAATACCCATTTGAGAATTGTTCTGCTTGTGTCCGGTGGACACTTTGCAGGTTGTGTCTTTGATGGTGATGCTGTTGTGGCTCACAAGACATTTCACAGATATGTTGTAAGGGCCAAGGCAGGAAAAAAACAATCGTCTAAAGATGCTTCTGGCAGGGCTGCTCATTCTGCTGGGGCTTCACTTCGTCGATATAATGAACTTGCATTAAAGAAGGAAGTTCATGAACTGTTTGCTGCTTGGAAACCTTATTTTGATGCTTCCAATAGCATTTTTATACATGCACCATCAAGTAGTCGTCAACTTCTTTATGATGGAGAGAGATCATACTTTACCAATCAGCAATGTGATATTAGAAATATTGCTTTGACTGTTCGGAGGCCTACTTTCAGGGAAGCAAAACGTGTATATAGCCAGTTGACCCAGGTAACCCATGAAGGCGATGAGAAGGAAGTTTTGCAAAGAAACCAAGAGGATTCGGTATCAATTCACATTTCTAAAATAAATGTCAGTCCAACCTTAAGCAAGGGGGACATGGCTGAGTTGGATGACAAAAATAAAGCTGAAGTGGCTGAGTTGGATGACAAAAATAAAGCTGAAGCTTGTTCAAGTAAACAAAATGATGAACTCCCAATTTTGAGTAATGGAGAAAGTGAGGATGAACTATTTGGTAAATCAACTCCTTTACATCAGGCAGCACAATCGGGTGACTCTCTAAAGGTTTTAGAGCTCTTGGAAAAGGGTTTGGATCCTTGCATCAAAGATGAAAGGGGGAGGACCCCATATATGTTGGCACATGACAAAGAAGTGAGGGATACTTTCAGAAGGTTTATGGCGTCAAATCTTGACAAATGGGATTGGCAAGCTGCAAAAGTGCCCAGTGCATTGACCAAAGAAATGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCTAAGAGAAAAGCTAGAGCAAAAGAATTAAAGAAATTGCGTAAAGCAAAAGAAAAGAAGGCTCAGGTTGAAGCCACCTTGCCTAAGAATGATTCCAAAACTATAGAGAAGCAAGTAACTGCTTCAACATCGATTAAGGGACAATCTCAACTAAAAAGTGGTGTGCAATTATCCAAAGAGGACCAAATAAGAATGGCACAGGCTGCTGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGGAGAATAGCCGCCCTCAAAATTCAAGCTAATAGTGCAATCACTGCAGCTAGCATGTCAGAACCTAAATGCGGATTAGCAGGGAGATCCTAG 1989 0.4208 MINSGVNYLIVKLFGGSLAIDSYTMATNLPATKSTTTTSSQEKRHRSIFEVPRNFFDSCRLLPSPHSSVSDHHSVGQTQIIETSSNDDFVLDAPQNAVVSAPRWTCNTCKTQFDSLQDQRSHFKSDIHRFNVKLTIAGKNIVKEEDFEFLTSEFVKDYDVSSISGSESDDDSETDSQSQSALHDKLSESFKHKLFFRLQTGQRVSVWKCLIMNVTENVLYDNEKAENEVVEKLKSLTAEPRDNTHLRIVLLVSGGHFAGCVFDGDAVVAHKTFHRYVVRAKAGKKQSSKDASGRAAHSAGASLRRYNELALKKEVHELFAAWKPYFDASNSIFIHAPSSSRQLLYDGERSYFTNQQCDIRNIALTVRRPTFREAKRVYSQLTQVTHEGDEKEVLQRNQEDSVSIHISKINVSPTLSKGDMAELDDKNKAEVAELDDKNKAEACSSKQNDELPILSNGESEDELFGKSTPLHQAAQSGDSLKVLELLEKGLDPCIKDERGRTPYMLAHDKEVRDTFRRFMASNLDKWDWQAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLRKAKEKKAQVEATLPKNDSKTIEKQVTASTSIKGQSQLKSGVQLSKEDQIRMAQAAEREKRAAAAERRIAALKIQANSAITAASMSEPKCGLAGRS* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2057 662 MobiDBLite consensus disorder prediction 438 464 - -
Gso18g2057 662 Pfam Bacteroidetes VLRF1 release factor 248 386 IPR041175 -
Gso18g2057 662 MobiDBLite consensus disorder prediction 566 606 - -
Gso18g2057 662 Coils Coil 541 579 - -
Gso18g2057 662 MobiDBLite consensus disorder prediction 580 606 - -
Gso18g2057 662 ProSitePatterns Zinc finger C2H2 type domain signature. 106 128 IPR013087 -
Gso18g2057 662 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 639 - -
Gso18g2057 662 ProSiteProfiles Ankyrin repeat profile. 465 497 IPR002110 GO:0005515
Gso18g2057 662 Coils Coil 612 641 - -
Gso18g2057 662 Coils Coil 420 440 - -
Gso18g2057 662 SUPERFAMILY Ankyrin repeat 467 520 IPR036770 -
Gso18g2057 662 Gene3D - 424 561 IPR036770 -
Gso18g2057 662 SUPERFAMILY beta-beta-alpha zinc fingers 102 135 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2057 Gso-Chr18 53506665 53512502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2057 43 647 C2H2 Transcription Factor Family AT1G01930 52.174 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2057 K26089 - gmx:100808912 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2057 18 53506665 53512502 Gso9g2207 9 46420289 46426333 GST