Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2055 ATGAGTTTCCTGCAGGGTATCGTTGATTCCTTCAACTCCATCTTCATACCCGATAACAACAATTATCACGACACCAATTCTCCTTCTTCTTCTTCTTCCTCAACGAATCGAATGGAAGCTTCTCCTCCTCCTCCTCCTCTTCCTCCTTCGGTTTCGAACGAGCGCGTTGCCTACAAGCTCAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGGCGTTAGGGCTGAGGAATGGGGCTTGATCGACGATGCGCTTCTCCACTACCGTAACGCGCACTCGATCCTCCTCGAAGCTAATTCAACTCCCGTTCCGTCCTACATCACTTCCAGTGAACAGCAGAAGGTGCAATCTTATCGAGAGAAGATATCCAAATGGCAGAGTCAGGTTTCTGAGAGATTGCAGACTCTCGCTAGACGAGCTGGTAGCTCATCTGCTAATCAGAGCACCTCAAAACTTGCCCAAACTGTGGCAGTTCCGATTAAGCCATCAAGTACTAGAAAAAATGTGTTACAAAAGCCCCCTCAAAGAACAGGTCAGGTGAATAAAGTTGGAAGCCCAAAATCTAGTCAAGGGTCTGGTGTAAATTATGATGACAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATGTTGCTGGGCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACGGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCCCCTGGTAATGGAAAAACAATGCTTGCCAAAGCAGTGGCTTCAGAATCACAAGCAACATTTTTTAATGTCACAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCAAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACATACCTTTACCAGATGAAAATGTTCGGAAGCTACTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAGGCTTGTAAAGGAGACCGAAGGATATTCTGGCAGTGATCTACAAGCCTTGTGTGAAGAAGCCGCAATGATGCCCATTAGAGAGCTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTGAGGTACGAGGATTTTAAGAAGGCAATGGCTACCATTAGGCCAAGCTTAAACAAAAGTAAGTGGGAAGAGCTTGAGCGTTGGAATGAGGATTTTGGTTCTAATTGA 1476 0.4411 MSFLQGIVDSFNSIFIPDNNNYHDTNSPSSSSSSTNRMEASPPPPPLPPSVSNERVAYKLKGYFDLATQEIAKGVRAEEWGLIDDALLHYRNAHSILLEANSTPVPSYITSSEQQKVQSYREKISKWQSQVSERLQTLARRAGSSSANQSTSKLAQTVAVPIKPSSTRKNVLQKPPQRTGQVNKVGSPKSSQGSGVNYDDKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENVRKLLLKHKLKGQAFSLPSRDLERLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMATIRPSLNKSKWEELERWNEDFGSN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2055 491 MobiDBLite consensus disorder prediction 164 197 - -
Gso18g2055 491 CDD AAA 241 386 - -
Gso18g2055 491 Pfam Vps4 C terminal oligomerisation domain 457 489 IPR015415 -
Gso18g2055 491 SMART smart 60 137 IPR007330 -
Gso18g2055 491 Gene3D - 215 485 IPR027417 -
Gso18g2055 491 SMART AAA_5 252 388 IPR003593 -
Gso18g2055 491 PANTHER AAA DOMAIN-CONTAINING 4 491 - -
Gso18g2055 491 Pfam ATPase family associated with various cellular activities (AAA) 256 386 IPR003959 GO:0005524|GO:0016887
Gso18g2055 491 Pfam AAA+ lid domain 411 442 IPR041569 -
Gso18g2055 491 Gene3D - 52 142 - -
Gso18g2055 491 PANTHER BNAC04G50250D PROTEIN 4 491 - -
Gso18g2055 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 487 IPR027417 -
Gso18g2055 491 MobiDBLite consensus disorder prediction 19 38 - -
Gso18g2055 491 Gene3D - 387 469 - -
Gso18g2055 491 CDD MIT_spastin 60 138 - -
Gso18g2055 491 MobiDBLite consensus disorder prediction 19 51 - -
Gso18g2055 491 ProSitePatterns AAA-protein family signature. 358 377 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2055 Gso-Chr18 53483332 53490714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2055 215 441 Calmodulin-binding Proteins AT3G56690 42.797 1.29e-47 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2055 K13254 - gmx:100780946 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2055 18 53483332 53490714 Gso9g2205 9 46404856 46410830 GST