Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2041 ATGGGTAGAGGAAAGGTTGAGCTGAAGAGGATTGAGAACAAAATCAATCGCCAAGTTACCTTCTCCAAAAGAAGGAATGGTTTGGTGAAGAAAGCCAAAGAGCTCTCAGTGCTGTGTGATGCAGAGGTTGCCCTTGTCATTTTCTCAGCTCGTGGCAAGCCCTTCACCTTTCCAGACGATGCTGAAAGTATTATGAAAACCTATGATCGATACCGGAAGTACTACTCTCATCAACATGGCAATATTGAACTTGAAAATCAGGACTGGTACCAAGAAATGTTAAAGCTAAATGAAAAGTGTGAGTCTCTTCAAAGGACACAAAGGCTTCTGCACGGGGAAGATCTTGGACCACTAAGCATAAAAGAGTTACTAATTCTTGAGGAGCAACTTGAAAAAGCTTTATCACAAGCTAGGCAGAGGAAGACACAACTCATGATTAAACAAATGGAAGAGCTTCGCCAAAAGGAACGCCATCTTGAAGACCTGAATAAAGAACTTAGACTCAAGCCTCCTTTTCAGCTTGAGCCTTATGGATTTAATCTCAAAGCAAGCCTGTGGGGCTCTACTTCCTCTGCTGATGGCGATGGGAGCTTTCCCTTGCAGCCTTCCTTAACCTACCCTGAACCTTTCTTGCAAATAGGGTATTCTGTTCAAGGTGAGCCATCCATTGTCCCAAAGAGCATGGCCAGTGAGACTAATTTTCAGGGATGGTTCCTTTGA 720 0.4361 MGRGKVELKRIENKINRQVTFSKRRNGLVKKAKELSVLCDAEVALVIFSARGKPFTFPDDAESIMKTYDRYRKYYSHQHGNIELENQDWYQEMLKLNEKCESLQRTQRLLHGEDLGPLSIKELLILEEQLEKALSQARQRKTQLMIKQMEELRQKERHLEDLNKELRLKPPFQLEPYGFNLKASLWGSTSSADGDGSFPLQPSLTYPEPFLQIGYSVQGEPSIVPKSMASETNFQGWFL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2041 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso18g2041 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g2041 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g2041 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g2041 239 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gso18g2041 239 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2041 239 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gso18g2041 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g2041 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso18g2041 239 ProSiteProfiles K-box domain profile. 86 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2041 239 Coils Coil 86 106 - -
Gso18g2041 239 Coils Coil 120 169 - -
Gso18g2041 239 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gso18g2041 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 - -
Gso18g2041 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2041 Gso-Chr18 53247331 53252685 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2041 1 239 MADS-box Gene Family AT2G45650 55.469 8.80e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso18g2041 K-box 6.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2041 K09264 - gmx:100813753 454.136