Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2039 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTCACCTTCTCAAAGCGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGACACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAAAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAGGCTTCAAAACGGAAGCTCTTGGGAGAAGGTTTGGGGTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAATTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAAGTTTACAAGGAACAAATTGATCAACTAAAAGAGAAGGAAAGAGCCCTATATGCTGAAAATGCTAGGCTGTGTGAGCAGTATGGTATCCAGCCACAGCCAGCAACAAAGGATCCGAAAGAAATTCAACCCTATGCAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGACTACCCAGGTCTATCTAG 630 0.4381 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKEQIDQLKEKERALYAENARLCEQYGIQPQPATKDPKEIQPYAESSPSSEVETELFIGLPRSI* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2039 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Gso18g2039 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2039 209 Coils Coil 121 170 - -
Gso18g2039 209 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gso18g2039 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 MobiDBLite consensus disorder prediction 174 197 - -
Gso18g2039 209 Coils Coil 73 107 - -
Gso18g2039 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g2039 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso18g2039 209 PANTHER MADS BOX PROTEIN 1 206 - -
Gso18g2039 209 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Gso18g2039 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2039 Gso-Chr18 53220638 53237935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2039 1 156 MADS-box Gene Family AT2G45660 78.846 3.58e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso18g2039 K-box 8.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2039 - - gmx:100037477 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2039 18 53220638 53237935 Gso9g2193 9 46266268 46283469 GST
Gso18g2039 18 53220638 53237935 Gso7g0695 7 7494180 7518600 PCT
Gso18g2039 18 53220638 53237935 Gso3g0154 3 1933859 1957881 PCT
Gso7g0695 7 7494180 7518600 Gso18g2039 18 53220638 53237935 PCT
Gso3g0154 3 1933859 1957881 Gso18g2039 18 53220638 53237935 PCT