Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2030 ATGCAAAACCCAAACCCATCATCATCTTCTCCCCCTTCCCCTCCTTGGTTGGACTCAGCCCCGTTCATCCACCGGAGCCGCCACCTCCTCCGCCGCGCGCCGCCGCCCCTACACACGGCGGCGACCTTCTTCCGGCGCGCGAGCGGGCGGCGAATGATGCTGCGGGAGCCGTCGGTGCGGGTGCGGGAGGCGGCGGCAGCGGAGGTGGAGGGCCGGCAGAGCGAGTGGGCCTACTCGCGGCCGGTGGTGGCGCTCGACGTCGCTTGGAACGCCGTGTTCCTCGCGATCGGCGCGTCGGTGCTAGCGCTGAGCACCGACGAGGACCCCTGCGTGCCGCTCAGGGCGTGGATTGTGGGGTACCTGCTGCAGGGCGCGTTGCACTCTCTCTGCGTTGTTGCTGAGTTCACAAGAAGAAGAAGAAGAAGACTGAGTGGGACCCACCCCGGTTCTAACGTGGTGGGCCACGTTCAATGGAGCTTCAGTTCCGAGAGTGACGAAGAGTTTTATCCTCCGGAACAGTTTCTCGAGGGTGACGGAAACAGCATCACAAAGCATATAGAAACCGTGAATACCATGCTTTCATTCATATGGTGGATTGTCGGGTTCTACTGGGTAACTGCTGGTGGCCAAAGTTTGACAAGGGATTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTCGTGATTGTACTCATCTGTGTTTCTGTTGCATGTCTTATTGGAATCGCAGTTTGCTGTTGTTTGCCATGCATACTTGCCATTCTTTATGTAGTGGCAGATCCGGAAGGGGCAACGAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTTAGAATAATAAAGGAATTTAAGAAAGAAGGTGATATTGAAGAATCTTCAAGAGGAATAATGACCGAAACTGAGAGTGAGACAGCCGCCGAACATGTTATTGCCTTAGAAGATGCAGAATGCTGCATCTGCCTTTCTGCCTATGATAATGGTGCTGAGCTCAGAGAACTTCCTTGCAACCACCATTTTCACTGTACATGCATAGACAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAGTTTAACATTTTGAGGACTGGCAACCACTATCAAGAAGTTTGA 1128 0.5319 MQNPNPSSSSPPSPPWLDSAPFIHRSRHLLRRAPPPLHTAATFFRRASGRRMMLREPSVRVREAAAAEVEGRQSEWAYSRPVVALDVAWNAVFLAIGASVLALSTDEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRRRRLSGTHPGSNVVGHVQWSFSSESDEEFYPPEQFLEGDGNSITKHIETVNTMLSFIWWIVGFYWVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVSVACLIGIAVCCCLPCILAILYVVADPEGATKEEIDQLPKYKFRIIKEFKKEGDIEESSRGIMTETESETAAEHVIALEDAECCICLSAYDNGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILRTGNHYQEV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2030 375 SMART ring_2 321 361 IPR001841 -
Gso18g2030 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 367 IPR013083 -
Gso18g2030 375 CDD RING-H2_RNF111_like 320 364 - -
Gso18g2030 375 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
Gso18g2030 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 375 - -
Gso18g2030 375 PANTHER TARGET OF ERK KINASE MPK-1 6 375 - -
Gso18g2030 375 SUPERFAMILY RING/U-box 308 367 - -
Gso18g2030 375 Pfam Ring finger domain 320 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2030 Gso-Chr18 53067333 53072186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2030 9 373 C3H Transcription Factor Family AT1G68070 46.448 2.11e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2030 - - gmx:100785943 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2030 18 53067333 53072186 Gso9g2187 9 46198685 46203844 GST