Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2028 ATGAGTTTTGGGGGGTTTCTTGAGACCAAACAAAGTGGTGGAGGTGGTGGTAGGATTGTAGTTTCAGATATTCCTTACAACAGCAACAACGGTTCAAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCTGCCTCGTTTAGCCACTCCTACTTTGACCAAATCCATGTTCAACTCTCCTGGCCTTTCTCTTGCACTTCAAAGTGATATAGATGGACAAGGGGATATGAACAGATTAATGCCCGAAAATTTTGAGCAGAATGGTTTGAGAAGGAGCCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGACAACATGGATGGTGGTTCTGGTGATGATTTTGATGCTGCCGACAACCCACCGAGGAAAAAACGCTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAATCGCTCTTCAAGGAGTGTCCTCACCCCGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTTAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCGCTGCTGAGGCAAGAGAATGACAAGCTTAGAGCTGAAAACATGTCTATGAGGGAAGCCATGAGAAATCCCATATGCTCAAACTGTGGAGGTCCTGCAATGATTGGTGAAATTTCACTCGAAGAACAGCACCTCAGAATTGAGAATGCTAGATTGAAAGATGAACTAGACCGTGTTTGTGCACTCGCTGGCAAGTTTCTGGGTCGACCCGTTTCTTCTCTAACAAGCTCAATTGGGCCTCCAATGCCAAACTCAAGTTTGGAGCTTGGTGTTGGGAGCAATGGTTTTGGACAAGGTTTAAGCACTGTGCCTTCAACAATGCCTGATTTTGGGGTTGGAATATCAAGCCCTTTAGCCATGGTGTCACCTTCAAGTACTAGACCAACCACAACAGCATTGGTGACTCCTTCTGGCTTTGACAACAGATCAATTGAGAGGTCTATTGTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTGGTGAAGATGGCACAAACTGGTGAGCCTCTTTGGATCAGAAGCTTGGAAGGGGGAAGAGAAATTCTCAACCATGAGGAGTACACAAGGACTATCACTCCTTGCATTGGCTTGAGACCCAATGGCTTTGTCACTGAGGCTTCTAGACAAACTGGAATGGTCATCATAAACAGCTTGGCCCTTGTTGAAACATTAATGGACTCAAATCGTTGGTCAGAGATGTTCCCTTGTATGATTGCTAGAACCTCAACCGCTGAAGTTATATCTAATGGAATAAATGGAACTAGAAATGGTGCCCTTCAGCTAATGCATGCTGAGCTTCAAGTTCTTTCTCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGGTTATGGGCAGTGGTAGATGTGTCCATAGATACCATCCGAGAAACTTCTGGAGCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAATTCACCAGCTCTTTAGACCCTTGTTGAGCTCAGGCATGGGGTTTGGTGCACAACGTTGGGTTACCACTCTTCAACGCCAATGCGAGTGCCTAGCCATTCTAATGTCCTCAGCAGCTCCCTCTAGAGAACATTCAGCAATAAGCTCAGGTGGAAGGAGAAGCATGTTGAAGCTGGCACATCGCATGACGAACAATTTCTGTTCGGGTGTGTGTGCCTCCACAGTGCACAAGTGGAACAAGCTGAACGCAGGAAACGTGGGGGAGGACGTGAGAGTGATGACGAGGAAGAGCGTGGACGACCCGGGCGAGCCGCCCGGGATCGTCCTAAGCGCTGCCACATCAGTGTGGCTTCCCGTCTCGTCGCAGAGGCTCTTCGACTTCCTCCGCGACGAGCGGCTCCGAAGCGAGTGGGATATCCTCTCCAACGGTGGACCCATGCAAGAGATGGCTCACATTGCAAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTTAGAGCCAGTGCTATAAATGCGAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCGTCGGGCTCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCGATGCACGTCGTGATGAACGGCGGCGACTCTGCTTACGTGGCGCTTCTCCCGTCAGGGTTCGCCATCGTGCCCGACGGGTCCGGCGAGGAGCAAGGTGGCGCGTCGCAGCAGAGGGCGGCGAGTGGGTGTCTCCTCACGGTGGCGTTTCAGATCCTTGTGAACAGCCTTCCGACGGCGAAGCTCACGGTGGAGTCGGTGGAGACGGTGAACAACCTCATCTCCTGCACCGTGCAGAAGATAAAATCAGCTCTTCATTGCGAGAGCTGA 2469 0.4998 MSFGGFLETKQSGGGGGRIVVSDIPYNSNNGSNHSNDIMPSGAISLPRLATPTLTKSMFNSPGLSLALQSDIDGQGDMNRLMPENFEQNGLRRSREEEHESRSGSDNMDGGSGDDFDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPICSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSLTSSIGPPMPNSSLELGVGSNGFGQGLSTVPSTMPDFGVGISSPLAMVSPSSTRPTTTALVTPSGFDNRSIERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNHEEYTRTITPCIGLRPNGFVTEASRQTGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGAPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQIHQLFRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSAAPSREHSAISSGGRRSMLKLAHRMTNNFCSGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSSQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAINANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSGEEQGGASQQRAASGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKSALHCES* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2028 822 CDD START_ArGLABRA2_like 334 562 - -
Gso18g2028 822 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Gso18g2028 822 MobiDBLite consensus disorder prediction 75 132 - -
Gso18g2028 822 Gene3D - 113 198 - -
Gso18g2028 822 Pfam START domain 339 563 IPR002913 GO:0008289
Gso18g2028 822 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 70 819 - -
Gso18g2028 822 SMART START_1 339 563 IPR002913 GO:0008289
Gso18g2028 822 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 70 819 IPR042160 -
Gso18g2028 822 ProSiteProfiles START domain profile. 330 566 IPR002913 GO:0008289
Gso18g2028 822 Coils Coil 176 211 - -
Gso18g2028 822 Pfam Homeodomain 125 180 IPR001356 GO:0003677
Gso18g2028 822 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Gso18g2028 822 SUPERFAMILY Bet v1-like 591 815 - -
Gso18g2028 822 SUPERFAMILY Bet v1-like 332 563 - -
Gso18g2028 822 SMART HOX_1 123 186 IPR001356 GO:0003677
Gso18g2028 822 CDD homeodomain 124 182 IPR001356 GO:0003677
Gso18g2028 822 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Gso18g2028 822 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2028 Gso-Chr18 53033835 53040420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2028 1 822 Homeobox Transcription Factor Family AT3G61150 64.846 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso18g2028 START 4.8e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2028 K09338 - gmx:100787537 1589.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2028 18 53033835 53040420 Gso9g2185 9 46168422 46174596 GST