Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2025 ATGACACGACAATTTCAAGAACCCACCTTGTTCTCCAATGTTGCTAATACTTTCATCAATCATATGGTCTATATAAGCATCTTTGTCTCAACTTTTGATCCAAGCTTTGGTGTGAGACTTTGTCGAATGCAGTTACCAATTCAACATGACATTTTCAATCATCAGTGTAGCCACTGTTGTTATAATGTAGTGGGTACACCATTCATTTTTCTAGCTGATGGACTTCCATCAAGAGGATTAGTGCAAAGAATGGCCTGTGATGGAGGTGAGCATTTGTCTTTGCCTGCGGGGGCAACGACACTCGAAAGATTTATGGTTGAAGATGAACAGGAGGATCCATGTGCCATATGCATCAAGGATTTCAACTCTGGTGATAATGCAGCAAGGTTGCCTTGCTCTCATGTCTTCCACCCTGATTGTATTTTGCAATGGGAGAAACAAAATGCCGAGAAAAAGAAAAGCCAGAACATAGATCATAGAGAGAGTAGAAACGAGAGTAGGGGCAAATAA 510 0.4098 MTRQFQEPTLFSNVANTFINHMVYISIFVSTFDPSFGVRLCRMQLPIQHDIFNHQCSHCCYNVVGTPFIFLADGLPSRGLVQRMACDGGEHLSLPAGATTLERFMVEDEQEDPCAICIKDFNSGDNAARLPCSHVFHPDCILQWEKQNAEKKKSQNIDHRESRNESRGK* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2025 169 MobiDBLite consensus disorder prediction 149 169 - -
Gso18g2025 169 ProSiteProfiles Zinc finger RING-type profile. 114 144 IPR001841 -
Gso18g2025 169 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 100 147 - -
Gso18g2025 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 147 - -
Gso18g2025 169 Pfam RING-like zinc finger 114 141 IPR001841 -
Gso18g2025 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 169 IPR013083 -
Gso18g2025 169 SUPERFAMILY RING/U-box 108 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2025 Gso-Chr18 52990147 52991136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2025 75 149 C3H Transcription Factor Family AT1G14200 32.099 8.24e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2025 - K22378 gsj:114396617 360.147