Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2013 ATGGTGGAAGATGGTGATGAGGTTGATGCACGTTCCACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTTGTCCTTGATAAGGCCAGAGAGGTCAAGGGATTTGCTGGTAGATGGAAGATGATTGTTGCGAAATTGGAACAGATCCCTTCGCAGTTATCGGATTTGTCGAGCCATCCATGCTTCTCGAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCAAAAACACTTGGGGAAGCGATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCGGATGCAGAGTGATCTGGATGCATTGGCTGGGAAGCTTGATTTGAATTTGAGGGATTGTGGGCTTCTGATCAAGACTGGTGTGCTTGGTGAGGCTACTTTGCCATTAACTGTGTCTAGTTCTGTGGCAGAATCAGATGTTGCAACACACAACAACATAAGGGAGTTGCTGGCGCGCCTTCAGATCGGGCACTTGGAAGCGAAGCACCGAGCTTTAGACAGCGTTGTTGAGGCCATGAAGGAGGATGAGAAGAGTGTTTTAGCTGTTCTTGGTCGGAGCAACATTGCTGCTTTGGTTCAATTGCTTACAGCTACCTCTCCCAGGATAAGAGAAAAAACAGTTACTGTAATATGCTCGCTTGCAGAAACCGGTAGCTGTGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCTCCTCTTATAAGGCTTGTTGAATCCGGCAGTGTGGTGGGGAAGGAGAAGGCAACAATATCCCTTCAGAGGTTGTCGATGTCAGCCGAAACAGCACGAGCAATCGTGGGACATGGCGGGGTTCGTCCATTGGTTGCACTTTGTCAAACCGGTGATTCTGTGTCACAGGCCGCGGCTGCGTGTACTCTGAAGAACATATCAGCTGTTCCTGAGGTGAGACAAGCATTGGCTGAAGAAGGGATTGTGACGGTAATGATCAATCTGCTTAACTGTGGAATTCTGTTAGGTTCCAAAGAGCATGCTGCAGAGTGCTTGCAGAACCTCACTGCAAGCAATGAGAATCTAAGGAAGAGTGTCATATCAGAAGGTGGTGTTAGGAGTCTTCTGGCTTATCTTGATGGTCCACTTCCTCAGGAATCTGCGGTTGGAGCATTGAGGAACTTGGTTGGATTAGTCCCTGAGGAATCCTTGGTTTCCCTCGGTTTGATCCCCCGTTTGACTCATGTGTTAAAGTCCGGATCCTTAGGTGCTCAGCAAGCAGCTGCGGCTGCGATATGCTGCGCTTGCAGTTCCACAGACATGAAGAAAATGGTTGGTGAAGCTGGCTGCATCCCTCTCCTTGTGAAGATGCTTGAGGCCAAGTCAAACAGTGTTAGAGAGGTTGCTGCTCAAGCAATAGCAAGCTTGATGGTTGTGTCTCAGAATCGAAGAGAGGTTAAGAAGGATGATAAGAGTGTGCCAAACTTGGTTCAGTTGCTTGATCCAAGCCCTCAGAATACTGCAAAAAAATATGCAGTTACTTGCCTTGGATCACTTTCTTCATGTAAGAAATGTAAGAAGCTAATGATCTCGTATGGGGCAATTGGGTATCTGAAGAAACTTACTGAGATGGACATTCCAGGAGCTAAAAAGCTGCATGAAAGGTTGGAAAGAGGGAAATTTAGAAGTTTGTTTAGCAAGAAATAG 1674 0.4689 MVEDGDEVDARSTEDWLLHAQELVPVVLDKAREVKGFAGRWKMIVAKLEQIPSQLSDLSSHPCFSKNALCKEQLQAVSKTLGEAIELAELCVKEKYEGKLRMQSDLDALAGKLDLNLRDCGLLIKTGVLGEATLPLTVSSSVAESDVATHNNIRELLARLQIGHLEAKHRALDSVVEAMKEDEKSVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAETGSCENWLVSEGVLPPLIRLVESGSVVGKEKATISLQRLSMSAETARAIVGHGGVRPLVALCQTGDSVSQAAAACTLKNISAVPEVRQALAEEGIVTVMINLLNCGILLGSKEHAAECLQNLTASNENLRKSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGLVPEESLVSLGLIPRLTHVLKSGSLGAQQAAAAAICCACSSTDMKKMVGEAGCIPLLVKMLEAKSNSVREVAAQAIASLMVVSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVTCLGSLSSCKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLERGKFRSLFSKK* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2013 557 SUPERFAMILY ARM repeat 153 534 IPR016024 -
Gso18g2013 557 SMART arm_5 305 346 IPR000225 GO:0005515
Gso18g2013 557 SMART arm_5 182 222 IPR000225 GO:0005515
Gso18g2013 557 SMART arm_5 347 386 IPR000225 GO:0005515
Gso18g2013 557 SMART arm_5 427 467 IPR000225 GO:0005515
Gso18g2013 557 SMART arm_5 389 426 IPR000225 GO:0005515
Gso18g2013 557 SMART arm_5 468 510 IPR000225 GO:0005515
Gso18g2013 557 SMART arm_5 264 304 IPR000225 GO:0005515
Gso18g2013 557 Gene3D - 187 330 IPR011989 -
Gso18g2013 557 Pfam Armadillo/beta-catenin-like repeat 428 465 IPR000225 GO:0005515
Gso18g2013 557 Pfam Armadillo/beta-catenin-like repeat 268 304 IPR000225 GO:0005515
Gso18g2013 557 Gene3D - 331 540 IPR011989 -
Gso18g2013 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 557 - -
Gso18g2013 557 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 7 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2013 Gso-Chr18 52727048 52730738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2013 203 476 U-box Gene Family AT3G54790 26.978 4.90e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2013 - - gmx:100789140 1045.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2013 18 52727048 52730738 Gso9g2180 9 46090035 46093756 GST