Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2011 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACCAGAATCATTTGTGGGAGGCTAAGAGGGGGTGTTGAATCTCGGATGATGTACGAGATTGAATCAAGAATTGATATGGAACAGCCAGAACATCATGTTAATGACCCTGAATCCGATCCTGTTCTTCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAGAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGGAAACAATCCACCTGTCCAGTATGCCGTCTGCCGTTGAAAAACTCATCCGAAACGAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGACAGAAACGATGCTATTGAGAGATATGTTGAACCTACACCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGAGAACAAGAAGCAAGGCAATGA 582 0.4381 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRIDMEQPEHHVNDPESDPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSDRNDAIERYVEPTPTAASNSLQPTSGEQEARQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2011 193 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Gso18g2011 193 SMART ring_2 90 131 IPR001841 -
Gso18g2011 193 PANTHER OS02G0676500 PROTEIN 1 188 - -
Gso18g2011 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Gso18g2011 193 PANTHER OS11G0150450 PROTEIN 1 188 - -
Gso18g2011 193 MobiDBLite consensus disorder prediction 152 193 - -
Gso18g2011 193 Pfam Ring finger domain 89 132 IPR001841 -
Gso18g2011 193 MobiDBLite consensus disorder prediction 174 193 - -
Gso18g2011 193 SUPERFAMILY RING/U-box 80 139 - -
Gso18g2011 193 CDD RING-H2_PA-TM-RING 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2011 Gso-Chr18 52693919 52696318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2011 79 135 C3H Transcription Factor Family AT4G10160 54.386 2.71e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2011 - - gmx:100790202 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2011 18 52693919 52696318 Gso9g2178 9 46060635 46062943 GST