Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2008 ATGGGGGTTGGTGGTAATTTCTGGGACCTGCTAAAGCCCTATGCGCGCAAAGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCAGTGGACCTTTCGTTCTGGATTGTTCAGCACGAGAATGCCATCAAGGCCACGCATGTCAGAAACCCCCATCTAAGGCTTACCTTCTTCCGCACCATCAATCTTTTCTCCAAGTTTGGAGCACTTCCGGTGTTCATTGTTGATGGGACTCCATCACCGTTAAAATCACGGGCCAGGATTGCGAGATATTTCCGGTCTTCTGGCATTGAATTGGCTAGCTTGCCGGTGCCTGAAGAAGGTGTTTCAGCTGAGAGGAACCACATGTTTTCAAGTCATGTTCAAAAATGTGTGGAACTGGTTGAACTACTTGGAATGCCTGTGCTAAAGGCTAAAGGAGAGGCTGAATCACTCTGTGCTCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCCGACAGTGATGCATTCCTCTTTGGGGCCAACTGCATTATAAAATGTTTCTGTCCCAACTTCAAAGAACCATTTGAATGCTACAATATGTCTGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATAAAGGGTGTTCGAGGGATTGGGCTTGATACTGCACTTCGTTTTGTTAAGGCTTTTAGTGAAGAAGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATACTTCACAAATTCCCATCTGCATTAAATTTGAGGATGATATGGATATGGATGGGAACTCCCTAAATAGAAAACAATCTCACTGTTCACTCTGTGGGCATCCAGGCAGCAAAAAAGATCATATGAAATTTCCCTGTGAATTTTGTGTCACAAAGGCTGATGAAGGTTGCCAGAGAAAACCAGAGGATTTTAAATGTGATTGCTTCTCCTGTGATATGAATAGGAAACATAAGGAGAAAAAAAGACTGAAAAATTGGCACACAAAAATTTGTCACAAGATTGCAGAGGAGCCAAACTTTCCCAAGAATGAAATCATTGATATGTATTTGTGCAATGACAATGCAAGTGATGGCCCACACATTGTATGGGGAAAACCGAATATTGAGATGCTGATTGATTTTTTAAACTTCCATCAGCATTGGGAACCAGCTTACGTTCGACGGATGATGTTTCCTATGATGTCAACCATCTTTTTGAGAGATATGACAACAACTACAGAAGAGACTATGTTATTTGGGCAATATCAGTTTGATTCCATAGAACGTGTCAAGATGAGATATGGATACCAATTTTTTGTGGTCAAGTGGAAACATGCAGGGGTTAACATTTCCTGTAAAGTTCCATTGAAGGAATCAAGTGTGCAACAGGATGCTATAATAGAGCTTGATGAAACGGTGGATCTACTGGATGACTGTGATGTTCCAGAGATTCATGAAGACAGTGGGTGTCGTTTTCTGCTTACTGATGAAAATATGGACCTTGTAGGTGCTGCTTTTCCAGCAGAAGTCAAAAGGTTTTGGCAAGAGCAGGAACTGAAAAGAAGAAAGAACTCAACATCAAGATCTCAAGAAAATGAAAAATCACCATCACCAAACTCAAGAAGTATTCAGCTAAACATTACAGAGTTCTACCCATCAACCAAAGTTAAACATCGTCAATCAAAACAAGGAGGAGGAGAGTCATCCAAGATTGCTGATAGTCAAGGCAATGAGGGCTCAAAAATGAAAAGGAAAATGTCAAGTCCTGATAAGATTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGATTAG 1821 0.4075 MGVGGNFWDLLKPYARKEGFDFLRNKRVAVDLSFWIVQHENAIKATHVRNPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKSRARIARYFRSSGIELASLPVPEEGVSAERNHMFSSHVQKCVELVELLGMPVLKAKGEAESLCAQLNSEGHVDACITADSDAFLFGANCIIKCFCPNFKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDIKGVRGIGLDTALRFVKAFSEEDILNRLHEIGKGNTSQIPICIKFEDDMDMDGNSLNRKQSHCSLCGHPGSKKDHMKFPCEFCVTKADEGCQRKPEDFKCDCFSCDMNRKHKEKKRLKNWHTKICHKIAEEPNFPKNEIIDMYLCNDNASDGPHIVWGKPNIEMLIDFLNFHQHWEPAYVRRMMFPMMSTIFLRDMTTTTEETMLFGQYQFDSIERVKMRYGYQFFVVKWKHAGVNISCKVPLKESSVQQDAIIELDETVDLLDDCDVPEIHEDSGCRFLLTDENMDLVGAAFPAEVKRFWQEQELKRRKNSTSRSQENEKSPSPNSRSIQLNITEFYPSTKVKHRQSKQGGGESSKIADSQGNEGSKMKRKMSSPDKIPKSVRRRLLFD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2008 606 MobiDBLite consensus disorder prediction 520 606 - -
Gso18g2008 606 CDD PIN_GEN1 2 203 - -
Gso18g2008 606 Gene3D - 3 198 - -
Gso18g2008 606 SMART xpgn3 1 97 IPR006085 GO:0004518
Gso18g2008 606 Gene3D - 199 258 - -
Gso18g2008 606 MobiDBLite consensus disorder prediction 580 606 - -
Gso18g2008 606 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Gso18g2008 606 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 593 IPR006084 -
Gso18g2008 606 SMART xpgineu 129 199 IPR006086 GO:0004518
Gso18g2008 606 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
Gso18g2008 606 MobiDBLite consensus disorder prediction 533 579 - -
Gso18g2008 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Gso18g2008 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Gso18g2008 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Gso18g2008 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Gso18g2008 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Gso18g2008 606 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 593 - -
Gso18g2008 606 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Gso18g2008 606 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 412 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2008 Gso-Chr18 52672028 52676716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2008 16 246 Core DNA Replication Machinery Family AT5G26680 28.685 6.27e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2008 K15338 - gmx:100791251 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2008 18 52672028 52676716 Gso9g2175 9 46041091 46045745 GST