Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g2005 ATGGCGAGCCCAGAAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTACAGGCAAATGGGGTGGAGCTACGAGGTTGCAAGATCAAGTGGTGTGGTTCCAAACGAGGGTTTGGCATCTTTTCTGATAAAGATGTTTGTGATGGGGTTATGTTGGTTGTTCCACTAGATTTAGCAATTACTCCAATGAGGGTGTTGCAAGATCCTCTTCTAGGACCAGCATGTAGAGCAATGTTTGAAGAAGGAGATGTAGACGACAGGTTATTAATGATGCTGTTACTGACTGTGGAGCGTTTGCGTAAAAATTCTCTATGGAAGCCGTACCTTGATATGCTACCAACCACTTTTGGAAATCCACTTTGGTTTAGTGATGATGAACTTCAAGAGCTAAGAGGAACAACATTATATCGTGCAACTGAATTGCAGAAGAAAAGCCTGCTTTCTTTGTATGAATCTAAAGTGAAGGATATAGTGAAGAAACTTTTGACTCTTGATGGAAATTCAGAGATTGAGGTGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGTCGTGCTTTGAACATTCCAATGCCTCATTCTTATGTATTTCCAGAAATGCAAGATGCTCAAGACATTTGCGATCCAGAAGCTGATGAAAAAAGAAGCCAGATTGAGCAATCTGACAATCTGACCAAAGAAGGGACATGTAACCCAATGACAGGAGACACTGTTTGGGTTGAAGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGATCTGAAGCCAATAGCAACATGGGAAGTTGATGGAACTGGTTTAGCATCAGGAGTTCCTTTCTCCATGTATCTTATCTCTGCTGCTCAAAGTCCCTTGCAGATTGATCAAGAAATCTACATTAGTTATGGAAACAAGGGAAATGAGGAACTTCTGTATCTGTATGGTTTTGTTATTGATGATAACACTGATGACTATCTCATGGTCCACTATCCAGCAGAAGCAATTAATACAATTTCCTTCTCTGAGTCCAAAAACCAGCTTCTTGAAGTGCAGAAGGCTGAATTGAGATGTCTTTTACCCAAAACTTCACTGGATAATGGATTTTTTCCGTTAAACACCCAAAACGGTGAAGAAAATAACAAGTCCAAAGCTGACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAGATGCCATCTTATGTAAACAAGCTGGTGTTTCCTGAGAAATTTATGACTACTTTGAGAACCATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGCTGGACCTGAAAGGGAGAGACAACTATCAGATACAGATGTCCAATCAGCAGTGTGGGAGGTCTGTGGTGATTCTGGAGCTTTACAATTGCTTGTCGATCTTCTTCGTGTGAAGATGATGGATCTTGAAGAGAGTTCTGGAACAGAGGAAAATGACCTTGATTTGCTCAAGAAAGCCCTTATTATTGATAGCCATGAAGATAGCAAACAATGCCTGAGCAATTTAAGCCCAAAGGAAAATGACTCAGAGGAGCCAAAGTTGATGACTAGAAACAAGTGGTCTGCTATAGTATATAGGCGTGGCCAGAAGCAGCTAACTCGTTTATTCTTGAAAGAAGCAGAACATGCTTTGCAGTTATCTCTGAATGAAGAAGAGTTCACTTTTCCTTGTTAA 1680 0.4095 MASPEEAKLETFMQWLQANGVELRGCKIKWCGSKRGFGIFSDKDVCDGVMLVVPLDLAITPMRVLQDPLLGPACRAMFEEGDVDDRLLMMLLLTVERLRKNSLWKPYLDMLPTTFGNPLWFSDDELQELRGTTLYRATELQKKSLLSLYESKVKDIVKKLLTLDGNSEIEVCFEDFLWANSVFWSRALNIPMPHSYVFPEMQDAQDICDPEADEKRSQIEQSDNLTKEGTCNPMTGDTVWVEGLVPGIDFCNHDLKPIATWEVDGTGLASGVPFSMYLISAAQSPLQIDQEIYISYGNKGNEELLYLYGFVIDDNTDDYLMVHYPAEAINTISFSESKNQLLEVQKAELRCLLPKTSLDNGFFPLNTQNGEENNKSKADQVCNYSWSGQRKMPSYVNKLVFPEKFMTTLRTIAMQEDELFKVSSMLEELAGPERERQLSDTDVQSAVWEVCGDSGALQLLVDLLRVKMMDLEESSGTEENDLDLLKKALIIDSHEDSKQCLSNLSPKENDSEEPKLMTRNKWSAIVYRRGQKQLTRLFLKEAEHALQLSLNEEEFTFPC* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g2005 559 SUPERFAMILY SET domain 8 315 IPR046341 -
Gso18g2005 559 Gene3D set domain protein methyltransferase, domain 1 5 311 - -
Gso18g2005 559 CDD SET_LSMT 36 311 - -
Gso18g2005 559 PANTHER SET DOMAIN-CONTAINING PROTEIN 4 553 - -
Gso18g2005 559 Pfam SET domain 36 297 IPR001214 GO:0005515
Gso18g2005 559 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g2005 Gso-Chr18 52638399 52645594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g2005 8 322 NAC Transcription Factor Family AT3G56570 25.000 9.47e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso18g2005 SET 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g2005 - - gmx:100777394 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2005 18 52638399 52645594 Gso9g2173 9 46012251 46019858 GST