Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1986 ATGTCATTCACAGGAACTACAGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACATGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCAGTCACTGCAAGGGATACCTAACGATGAACACCTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGATAAACAAAATGAGACGAATAAGGCCCCCAACAGACTGTCATCCATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGTTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTGCCCTGGATGGTGTCCTCTACTGTAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTATCATCATGTACTCCAATCTGCTAACCACAAGAAGAATGTCACTCCTGAACCTGCTGAACCTGCAGCTGAAGGAGATGAAGAGCCACCAAAGCCAGAAGAATCTGATTCTGAGGAACACACAGAAGAAAAGCCTCAAAATGAAGCATAG 651 0.4316 MSFTGTTDKCKACDKTVYVVDMLTLEGIPYHKNCFRCSHCKGYLTMNTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSDKQNETNKAPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQSANHKKNVTPEPAEPAAEGDEEPPKPEESDSEEHTEEKPQNEA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1986 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gso18g1986 216 Pfam LIM domain 10 65 IPR001781 -
Gso18g1986 216 Pfam LIM domain 106 161 IPR001781 -
Gso18g1986 216 SMART lim_4 105 157 IPR001781 -
Gso18g1986 216 SMART lim_4 9 61 IPR001781 -
Gso18g1986 216 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Gso18g1986 216 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Gso18g1986 216 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gso18g1986 216 MobiDBLite consensus disorder prediction 175 216 - -
Gso18g1986 216 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Gso18g1986 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Gso18g1986 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Gso18g1986 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gso18g1986 216 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gso18g1986 216 CDD LIM1_SF3 6 68 - -
Gso18g1986 216 Gene3D Cysteine Rich Protein 102 170 - -
Gso18g1986 216 Gene3D Cysteine Rich Protein 4 74 - -
Gso18g1986 216 MobiDBLite consensus disorder prediction 191 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1986 Gso-Chr18 52463060 52465584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso18g1986 LIM 1.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1986 - K09377 gmx:100779513 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1986 18 52463060 52465584 Gso9g2156 9 45848959 45850886 GST
Gso18g1986 18 52463060 52465584 Gso7g0643 7 6844327 6847049 PCT
Gso18g1986 18 52463060 52465584 Gso3g0114 3 1379549 1382035 PCT
Gso7g0643 7 6844327 6847049 Gso18g1986 18 52463060 52465584 PCT
Gso3g0114 3 1379549 1382035 Gso18g1986 18 52463060 52465584 PCT