Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1979 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACCACCTGAGTTACATATTTCGCCTAATATGCGTCCAATCTCTAATCCAAATTTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTGCCATTGGAATCTTCAGCAATTTCAGCTCATGGTGTCAATGTGGGAGCTCCTACTGGGGCACCTCCAGGGGAACCTGTTAAGAGGAAGAGAGGAAGGCCTAGGAAATATGGAACCGACGGAAGTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGCTATCCTGGAGCCTTGACACAAAGCCAGAAACGTGGCAGAGGGCGCCCACCCGGGACTGGGAAGAAACAGCAATTGGCTTCGCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATAATCAATATTGCAAGTGGAGAAGACATTACAACAAAAATCATGGCATTTTCTCAGCAGGGAGCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCTACTGTCACACTTCGTCAGCCATCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTTGAGATAGTGTGTCTGTCAGGCTCTTACTTGGTCACCGATAATGGTGGCTCACGCAATCGAACTGGTGGATTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGTGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCTATGGGGTGGATCAAAGACAAAGAACAAGAAAAAGGAATCCTCAGAAGGTTCAGAAGTTGCTGTGGAGTCAGATCACCAGGGAGTTCATAATCCAGTTTCACTGAATAGCAGCATCTCACCAAATCAAAACCTTCCTCCAACCCCCCCATCTTTAAATCCTTGGTCGACATCGCGTCCATTGGACATGCGTAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1029 0.4772 MDRGDQMALSGSYYMQQRGIPGSGAPPELHISPNMRPISNPNLPFQSSIGGGTIGSTLPLESSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQGARAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDNGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFLWGGSKTKNKKKESSEGSEVAVESDHQGVHNPVSLNSSISPNQNLPPTPPSLNPWSTSRPLDMRNSHVDIDLMRG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1979 342 CDD DUF296 153 267 IPR005175 -
Gso18g1979 342 Gene3D - 154 297 - -
Gso18g1979 342 MobiDBLite consensus disorder prediction 1 42 - -
Gso18g1979 342 MobiDBLite consensus disorder prediction 100 119 - -
Gso18g1979 342 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Gso18g1979 342 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Gso18g1979 342 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Gso18g1979 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 IPR039605 GO:0003680
Gso18g1979 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Gso18g1979 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 - -
Gso18g1979 342 MobiDBLite consensus disorder prediction 69 136 - -
Gso18g1979 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Gso18g1979 342 MobiDBLite consensus disorder prediction 273 287 - -
Gso18g1979 342 MobiDBLite consensus disorder prediction 272 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1979 Gso-Chr18 52396212 52404162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1979 1 342 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.589 1.46e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1979 - - gmx:100802542 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1979 18 52396212 52404162 Gso9g2147 9 45762665 45769694 GST
Gso18g1979 18 52396212 52404162 Gso7g0630 7 6700374 6706926 PCT
Gso18g1979 18 52396212 52404162 Gso3g0096 3 1061294 1068986 PCT
Gso7g0630 7 6700374 6706926 Gso18g1979 18 52396212 52404162 PCT
Gso3g0096 3 1061294 1068986 Gso18g1979 18 52396212 52404162 PCT