Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1974 ATGGCAACTGATATGCAGAGGCTTGTTGGAACGAGTGAGGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGATGACGATGATGATTATGAGGAAAATGGAGGTGAGCAGGGAAATGCTTCAGTATCAGGGATGGTAGAGATTGATGGTGGGAATGGGATAGGAACTGCCACTGATGACAACAGGTTTCAGCAGCACCAGCAGTTTCAAGAGCAAGTAGGCACCCCAGGTGGAGGTACTCGAAGATCTAGGCCGCTAGAAGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCGGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAAGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGTTCAAAAGCCTGCTGGTGGTAATTCTACAATTGTCACTTCATCATCTTCCCATGCGGCTTCACAACAGACTCCATCTGCTTCTCTCAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTATAATGCATGTCAAACAAAAAGTGTTTTTATGCCAACTCCGTCTCCTTATGGTCTATCCTCAAGTTCCCGGTCTCAAACATCTATGGTGGGGGATGGAGAAGCACAAAGAGACAATCGTCCTCTGATTGGTGGTTCAATGGATAATGCTGATGATAAGCAGATTGCTGACTTACCCCCCAGATTACCAGAGCGTGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTACCGTTAGGGGTGATCAATATTAAATGTGAGCTAGTTGATCCGGATGGTCTACTAAAGCAGCTGAAGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGACTGTTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAGCTTAAGCTTAAGCTGCAGGTTGTGATGTCATTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCATTACCCCATTGGGTTGCTGAGATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGGGTTTTAAGAGGCCGTACTGCTTTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAATATTTTGAGGATGGGTTAATCTCTATGATTGAAGTTGGACTGGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGTAAGGGGTCACGCTATTTGGGCTAGAGGGCCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTGATTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGCATTGCTGCAAAGTTATCGGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTGCCGAATTAACCGCTGGGTATTATAACCCATGCAATCGTGATGGTTATGCTGCAATTATGACAATGTTAAAGACAAATGGAATCAACTTAAACATTCCTTGTGTTGACTTGCACACATTGAACCAACATGAGGGCTTTCCAGAGACCTTTGCAGATCCCGAGGGACTAGTCTGGCAAGTGTTGAATGCCGGGTGGGAAGTTGACCTACCAGTTACCAGTCAGAATGGATTTCCTTGCCTAAACAGAGTTGGCTATAACAAGGTTTTGGATAATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCTTTTACTTACCTGAGGCTTAGTTCACTTCTCATGGAACGACAAAACTTCATAGAGTTTGAAAGATTTGTCAAGAGAATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2115 0.443 MATDMQRLVGTSEDDEEMGMDVKDEDDDDDDYEENGGEQGNASVSGMVEIDGGNGIGTATDDNRFQQHQQFQEQVGTPGGGTRRSRPLEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVQKPAGGNSTIVTSSSSHAASQQTPSASLRGVASGYRSPLEYNACQTKSVFMPTPSPYGLSSSSRSQTSMVGDGEAQRDNRPLIGGSMDNADDKQIADLPPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLKVLKSVHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTALEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEVRGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLIDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKTNGINLNIPCVDLHTLNQHEGFPETFADPEGLVWQVLNAGWEVDLPVTSQNGFPCLNRVGYNKVLDNAKPMNDPDGRHFSSFTYLRLSSLLMERQNFIEFERFVKRMHGEAVLDLQV* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1974 704 MobiDBLite consensus disorder prediction 17 36 - -
Gso18g1974 704 MobiDBLite consensus disorder prediction 146 183 - -
Gso18g1974 704 MobiDBLite consensus disorder prediction 59 79 - -
Gso18g1974 704 PRINTS Plant beta-amylase signature 427 436 IPR001371 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Plant beta-amylase signature 670 684 IPR001371 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Plant beta-amylase signature 685 699 IPR001371 GO:0000272|GO:0016161
Gso18g1974 704 PANTHER - 78 704 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 301 315 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 322 340 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 344 365 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 437 459 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 510 529 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 544 560 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 561 572 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 579 602 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 619 641 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 PANTHER BETA-AMYLASE 78 704 - -
Gso18g1974 704 MobiDBLite consensus disorder prediction 208 245 - -
Gso18g1974 704 SUPERFAMILY (Trans)glycosidases 263 700 IPR017853 -
Gso18g1974 704 MobiDBLite consensus disorder prediction 84 98 - -
Gso18g1974 704 Gene3D Glycosidases 258 703 - -
Gso18g1974 704 MobiDBLite consensus disorder prediction 208 227 - -
Gso18g1974 704 Pfam Glycosyl hydrolase family 14 270 689 IPR001554 GO:0000272|GO:0016161
Gso18g1974 704 Pfam BES1/BZR1 plant transcription factor, N-terminal 81 224 IPR008540 -
Gso18g1974 704 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1974 Gso-Chr18 52316045 52322498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1974 1 701 Glycoside Hydrolase AT2G45880 65.297 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gso18g1974 Glyco_hydro_14 1.2e-101 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1974 K01177 - gmx:100805560 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1974 18 52316045 52322498 Gso9g2143 9 45720594 45726909 GST