Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1968 ATGGCTGTGGTGAGTCCTATGCCTGCAACAACACAAAGGATGGGTTCAGTGAGGTCACTTTCTGATGCTGGTGGAAAATTTTTGGAAGAGCCTAATCCAAGTGTGGTTGATCAGCCAATCTATGTTGCTGTGACAAAAGAGGTGAAGGAGAGCAGATTAAATCTGATATGGGCAATACAAAACTCCGGAGGAAAGAGAATTTGCATTCTTTATGTGCATGTTCGTGCAACAATGGTCCCCCTACTGGGAGGTAAATTCCCTGCAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAGGCAAGGCATGCATAGGATTCTGGATGACTATCTTCGTATTTGTCAACGGATGGGGGTGAGAGCAGAGAAACTGCATATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAACTCATCTCCCAGCATGGCATCCAAAAGCTTGTTATGGGAGCAGCATCTGATAAGTACTATAATAGAAGAATGATGGACCTCAAATCCAAGAAAGCCATCTCTGTGTGTAAACAAGCTCCAGCTTCTTGTCATATACAGTTTGTCTGCAAAGGGCGCCTAATACACACAAGGGATCGCAGTTCCAATGAAGGTAATGCAGATGTCACATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAGTCTGTAACACTTGGTCAAGATCGCCGAGCAAATCTGACCAATCCTGCTCTAGAGTTATTTCGCAGAGTAAGGTCTGCCAATGATGGGCATGGAGCAAGCTTTATGACTGTTTCTTCTCCAGAAGACACTGAAGGGTTTTCAACTCCACATGACAGGATGGGTACCGAAGTAAGTTCTGATGAATCAGATAGGCTGTCAAGGATGAGTCCTTCGGGATTGTCAACATGCTCTGACAGTGCAGTTGAACTAGCATTCACCCCAAGTTTGATTAATGAAAGCAGTGAGAATGCATTGGAGTTGACTTTGAGTCGCCGGATTATAGAGGATCTTCATTATTCATCTCCTCCTAGTACACTGGATGGTGGAATGGATGATACTATCTACGAACAACTTGAGCAGGCTAGAGCTGAGGCTGAGAATGCTACGCTAAATGCATACCAAGAAACTGTAAGGCGTAGGAAAGCTGAAAAAGATGCCTTTGAAGCTATACGCAAGGTTAAAGCTTCTGAAAGTTTATATACAGAGGAGTTGAACCTGAGAAAAATGACAGAGGAAAAACTTAGGAAAGAAAAGGAAGAACTTGAGAGTATGAAGAGCTTGAGAGACAAAGTTAAGGAAGAACTCTGCCTTGCTCTTGATCAGAAGGAATCACTAGAGAGTCAAATTGCATCATCTGAACTTATGGTAAAGGAGTTGGAGCAGAAGATTTTATCTGCTGTGGATCTGTTACAAAGCTACAAGAATGAACGAGATGAATTGCAGATGCAGCGCGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCAGGCACCAATGTGCCTCAATTGTTCTCAGAATTCTCTTTTTCAGAGATTAAAGAAGCAACTAGTAACTTCAATCCATCCTCAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGCGACACACTGAGGTGGCTATAAAAATGTTGAACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGTTGAGCAAGCTTAGGCATCCTAATCTTATCACACTCATAGGGGCCTGTCCAGATTCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTTGCCTGCAAGAATAACACCCCTCCGTTGTCATGGCAAGCTCGAATTCGCATTGCTGCTGAACTATGCTCCGCTCTCATCTTTCTTCATTCCAGTAAACCTCACAGCGTAGTGCATGGTGACTTAAAACCCTCCAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATCTGTCGAATATTATCAAACTGCGAGAGTTCCAGTAGCAATACTACAGAGTTTTGGAGAACTGACCCAAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCCTCAGGGGAACTTACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACTGGGAGACCAGCATTGGGAATAACAAAGGAAGTGAAATATGCATTAGACACTGGAAAGTTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGTTGTGATATGAATAGAAAGAGCCGACCGGATCTTTATTCAGATGTCTGGAGGGTACTTGATGCAATGAGGGTTTCTTCTGGAGGTGCAAACTCCTTTGGATTAAGTTCTGAAGGGCTTTTACAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTTATGAGAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTCATGACAATTCACCAATGACTAACAGTAAGCTTGCACATCACAATCTTGTTCCCAACCGCGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAACCACTGA 2652 0.4321 MAVVSPMPATTQRMGSVRSLSDAGGKFLEEPNPSVVDQPIYVAVTKEVKESRLNLIWAIQNSGGKRICILYVHVRATMVPLLGGKFPASALKEEQVQAYWEEERQGMHRILDDYLRICQRMGVRAEKLHIEMDSIEKGILELISQHGIQKLVMGAASDKYYNRRMMDLKSKKAISVCKQAPASCHIQFVCKGRLIHTRDRSSNEGNADVTSPLVQQVPNSVRSLRSQSVTLGQDRRANLTNPALELFRRVRSANDGHGASFMTVSSPEDTEGFSTPHDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVELAFTPSLINESSENALELTLSRRIIEDLHYSSPPSTLDGGMDDTIYEQLEQARAEAENATLNAYQETVRRRKAEKDAFEAIRKVKASESLYTEELNLRKMTEEKLRKEKEELESMKSLRDKVKEELCLALDQKESLESQIASSELMVKELEQKILSAVDLLQSYKNERDELQMQRDNALREAEELRKKQGEASGTNVPQLFSEFSFSEIKEATSNFNPSSKIGEGGYGSIFKGVLRHTEVAIKMLNSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDSWALVYEYLPNGSLEDRLACKNNTPPLSWQARIRIAAELCSALIFLHSSKPHSVVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNTTEFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRVLDAMRVSSGGANSFGLSSEGLLQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGHDNSPMTNSKLAHHNLVPNRALRSAIQDWLQNH* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1968 883 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Gso18g1968 883 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Gso18g1968 883 Coils Coil 400 434 - -
Gso18g1968 883 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 53 159 - -
Gso18g1968 883 SUPERFAMILY Protein kinase-like (PK-like) 505 782 IPR011009 -
Gso18g1968 883 SUPERFAMILY RING/U-box 807 882 - -
Gso18g1968 883 Coils Coil 355 375 - -
Gso18g1968 883 Gene3D Phosphorylase Kinase; domain 1 510 597 - -
Gso18g1968 883 ProSiteProfiles U-box domain profile. 812 883 IPR003613 GO:0004842|GO:0016567
Gso18g1968 883 Gene3D HUPs 40 181 IPR014729 -
Gso18g1968 883 Coils Coil 442 497 - -
Gso18g1968 883 SMART Ubox_2 816 879 IPR003613 GO:0004842|GO:0016567
Gso18g1968 883 SMART serkin_6 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1968 883 MobiDBLite consensus disorder prediction 272 290 - -
Gso18g1968 883 CDD STK_N 39 192 - -
Gso18g1968 883 Pfam U-box domain 814 883 IPR003613 GO:0004842|GO:0016567
Gso18g1968 883 CDD RING-Ubox_WDSUB1_like 817 858 - -
Gso18g1968 883 Pfam Protein kinase domain 527 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1968 883 PANTHER U-BOX KINASE FAMILY PROTEIN 30 882 - -
Gso18g1968 883 Gene3D Transferase(Phosphotransferase) domain 1 598 801 - -
Gso18g1968 883 MobiDBLite consensus disorder prediction 204 235 - -
Gso18g1968 883 MobiDBLite consensus disorder prediction 200 235 - -
Gso18g1968 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 883 IPR013083 -
Gso18g1968 883 MobiDBLite consensus disorder prediction 257 300 - -
Gso18g1968 883 PANTHER OS02G0152300 PROTEIN 30 882 - -
Gso18g1968 883 ProSiteProfiles Protein kinase domain profile. 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1968 Gso-Chr18 52199213 52206673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1968 1 883 U-box Gene Family AT2G45910 53.535 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso18g1968 Pkinase 9.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1968 - - gmx:100807515 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1968 18 52199213 52206673 Gso9g2136 9 45646645 45654556 GST
Gso18g1968 18 52199213 52206673 Gso7g0612 7 6501280 6509431 PCT
Gso18g1968 18 52199213 52206673 Gso3g0078 3 846854 853280 PCT
Gso7g0612 7 6501280 6509431 Gso18g1968 18 52199213 52206673 PCT
Gso3g0078 3 846854 853280 Gso18g1968 18 52199213 52206673 PCT