Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1957 ATGATGAGTAATGGTGATCCATTGGATTTGTATAAGCTTTTCATGGTGGTGAAGGAGAAGGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGCTGAACTTGTTTATAGTAAACATTTGAGTTCTCTAGAGGCATGCTTAAAGAATGCTACTGATGGTAAGTTCCCTGAGTGTGGTTTAATAGATGATAGAGTTAAGTTTCACAAGCATTTGATGGAGGCGCAAGCTGAATCCTTGTTGGATGACTCTGGTGAGGAAGAGGCGGGGGATGAACTCGAGAGGATAGTGTGTGACTGTAAGGATGGGAGGAAGTTGTGTGGTAGTAATAGAGTGAAGTATGTGAAACCGGAGTCAAATGTGGCTGAACTCGAGAGGGTATATGAGTATTTAGATGAAACGAAGTCGTGTGTTAGTGATAGTGTGAAGGGCAAGAAATCAGATTCTAATGGGGATGAATTTGATAATGTATGTGACTTTCTAGATGGGAGGGAGTTGTGTGATACTAATAGGGTGAAGGGTGTGAGTCCAGAGTCTAATGGGGACAAGAAAGTTCAGAGCAAAGGACTTGTTGATTTGGATATGCTGGACAATGGGACGGATGAGCATATTATCAGAAACTTGTGCAGTCTTAATACTGAGAGGAATATACTGGAAGAGTTTGATGGGGGGAAAATATTAACTGTGGATGCATCTGATGCAGAGAGCAACATGCCTAGATTGTCGGATGGAAGCAAGTGCTGTGATAATGATGATGATGATGATAGTGATGAAGTCTTGATATTGGATCCATCTGGTGTTGACAAAGAGATATTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGATTACTAGCATTGCTAAAAATCCTTGTGATTCCACAGTCGGTTCGATTCCTGAAAAGTCTAAGTGGAAGTTTTACAGTAGTCAGGAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGCTGTCTTTCTGAAGAAAGATTTTGAGACAACCAGTGAACAGCTTAATTGGCAGGGACAGAAAATGCATCCTTCTATGTATGATGATCGTGTTGGGGCAATGTACAATCTTAGACAGAGGTTGAAATGTGACAAGAGAGTTTTATTGGGAAAAACTACATCTGGAGGAGTCTCCTTAGCTTCATCTGGAGGAACACATGTGGATTTGGAGAGGACCCCAAGTTCTCATGCTGAAGATCGTGCTGAGAAATTGTTACCTGACTCCGGTACTGCTCACTCAAGCCTTGATAGATGTGCCAGAGTGCACATCCCTTTGGGGCCAAACCATCAAGCTGAAGTGCCAGAATGGACTGTCATAACTTATGAGGTTGATTCAAAGTGGTTGGGGACCCAAATATGGCCTCCAAAAACTGTAAATTCCAAATGTCGTCTTTTTGAAAGGGACCCCATTGGAGAGGGAAGACAAAATTCATGTGGCTGCCAAGTACAAGGTTCTGTTGAGTGTGTCCGGTTCCACATTGCTAAGAGAAGGGCTAAAGTTAAGTTGGAATTGGGTGAGGCGTTTCACCAATGGAATTTACATAAGGTAGGTGAAGAAGTTGGGGGTTCATGGACAGAGCAAGAAGAGAAGAAGTTCAAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTTTTCAAAACATTTCCTAAGAAGAGCAGAGAAGATTTAGTCAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCTGATAACATTGACAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTTTTTGGACATCAAACACCAAAACCTCGCAGCTTCACCTTGTTATCCCCCAAAAAAGCCACATTCAAAAGGGAAAATAACAAGTGA 1956 0.4187 MMSNGDPLDLYKLFMVVKEKGGYDAVCKNKLWDLVGEEYGLGVKVGSSAELVYSKHLSSLEACLKNATDGKFPECGLIDDRVKFHKHLMEAQAESLLDDSGEEEAGDELERIVCDCKDGRKLCGSNRVKYVKPESNVAELERVYEYLDETKSCVSDSVKGKKSDSNGDEFDNVCDFLDGRELCDTNRVKGVSPESNGDKKVQSKGLVDLDMLDNGTDEHIIRNLCSLNTERNILEEFDGGKILTVDASDAESNMPRLSDGSKCCDNDDDDDSDEVLILDPSGVDKEIFGRKRKRESKSEMLSWITSIAKNPCDSTVGSIPEKSKWKFYSSQEIWKQVLLFREAVFLKKDFETTSEQLNWQGQKMHPSMYDDRVGAMYNLRQRLKCDKRVLLGKTTSGGVSLASSGGTHVDLERTPSSHAEDRAEKLLPDSGTAHSSLDRCARVHIPLGPNHQAEVPEWTVITYEVDSKWLGTQIWPPKTVNSKCRLFERDPIGEGRQNSCGCQVQGSVECVRFHIAKRRAKVKLELGEAFHQWNLHKVGEEVGGSWTEQEEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKPRSFTLLSPKKATFKRENNK* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1957 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 646 - -
Gso18g1957 651 Gene3D - 1 72 IPR036431 GO:0003677
Gso18g1957 651 ProSiteProfiles ELM2 domain profile. 443 567 IPR000949 -
Gso18g1957 651 CDD SANT 545 593 IPR001005 -
Gso18g1957 651 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Gso18g1957 651 CDD ARID 4 61 - -
Gso18g1957 651 SMART bright_3 1 66 IPR001606 GO:0003677
Gso18g1957 651 SUPERFAMILY ARID-like 4 73 IPR036431 GO:0003677
Gso18g1957 651 MobiDBLite consensus disorder prediction 604 651 - -
Gso18g1957 651 SMART sant 542 595 IPR001005 -
Gso18g1957 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 646 - -
Gso18g1957 651 SMART ELM2_2 445 497 IPR000949 -
Gso18g1957 651 MobiDBLite consensus disorder prediction 401 423 - -
Gso18g1957 651 MobiDBLite consensus disorder prediction 604 621 - -
Gso18g1957 651 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1957 Gso-Chr18 52062649 52068839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1957 5 78 ARID Transcription Factor Family AT1G20910 36.364 2.48e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso18g1957 ARID 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1957 - - gmx:102667655 1307.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1957 18 52062649 52068839 Gso9g2125 9 45535859 45541940 GST
Gso18g1957 18 52062649 52068839 Gso7g0602 7 6383807 6387874 PCT
Gso18g1957 18 52062649 52068839 Gso16g0286 16 3242339 3246763 PCT
Gso7g0602 7 6383807 6387874 Gso18g1957 18 52062649 52068839 PCT
Gso16g0286 16 3242339 3246763 Gso18g1957 18 52062649 52068839 PCT