Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1949 ATGGGTTTTCCCGTAGGGTACCCGGAGCTGCTGGTTCCGAAAATGTTCCTCCACGCGCTTTCCCTCCTCGCGTGGCTGCGCTCCCTCGTCTTCGCCCTCTTCCGCCTCCTCCGCATCTCCGACCTCCTCGACACCGATTCCGCCGCCTCTGACCTCCCTCCGCCGCCTCCGCCACGCGAGCCGACTCTCTCCGCCCTCCTCATCCGCGAGTTTCTCCCCGTGGCGGCGTTCCGCGACCTGGCAGCCGCCGACGGGGATCCTCCGCCGTCGGGCTGCGCCGTGTGCCTGAGCGAATTCTCCTCGGAAGAAGAAATCCGGTGTATGGCGAACTGCAAGCACATTTTCCACCGGTGGTGCGTGGACCGTTGGGTCGATCACGATCAGAAGACGTGTCCGCTCTGCAGAACTCCGTTTGTGCCGCATCACAAGCTCGAAGAATACAATCAGCGACTGTGGGCAGCTTCTGGAGTTTCACAGTTTTACTACCAAGACGATTACACGGCTTCTCTCTGA 513 0.616 MGFPVGYPELLVPKMFLHALSLLAWLRSLVFALFRLLRISDLLDTDSAASDLPPPPPPREPTLSALLIREFLPVAAFRDLAAADGDPPPSGCAVCLSEFSSEEEIRCMANCKHIFHRWCVDRWVDHDQKTCPLCRTPFVPHHKLEEYNQRLWAASGVSQFYYQDDYTASL* 171
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1949 170 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Gso18g1949 170 SMART ring_2 92 134 IPR001841 -
Gso18g1949 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 168 - -
Gso18g1949 170 Pfam Ring finger domain 92 135 IPR001841 -
Gso18g1949 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Gso18g1949 170 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 168 - -
Gso18g1949 170 SUPERFAMILY RING/U-box 85 145 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso18g1949 Gso-Chr18 51998363 51999171 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1949 1 168 C3H Transcription Factor Family AT1G63840 43.529 1.29e-47 150
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1949 K16281 - gmx:100813224 331.643
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1949 18 51998363 51999171 Gso9g2118 9 45472893 45473695 GST
Gso18g1949 18 51998363 51999171 Gso7g0591 7 6266251 6267042 PCT
Gso18g1949 18 51998363 51999171 Gso16g0279 16 3147852 3148576 PCT
Gso7g0591 7 6266251 6267042 Gso18g1949 18 51998363 51999171 PCT
Gso16g0279 16 3147852 3148576 Gso18g1949 18 51998363 51999171 PCT