Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1942 ATGACGACGATGGAGGAAGAGAGAGACGTGTCATCGGATGAGTTATCAGAGGAGAAATATGACCCAGTGGAGGAGATCCAAAGAGTCATCCAATCCATAGTTCAATTCGGCGAGTACCGGAGGACACAGAGGAAGGAGAGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTGCCTCTCTGGGAAGAGCTTCGTGACCTCCCACAACCCTTCCCAGAAATCGGCGTCACTTGGTTATCCAAAGTCAAGGATGTGCTTTTGTTCGCCAAGGATTTGTTGAAACTATGTAGCCAAGGAAGCAAGATCCACCTCGCTTTGGAAACCGAGGTAGTTATGATCACGTTTCAGAAAGTGTATGACAAATTAAGCCAAGCGTTTGGTGATGTGCCTTGTGATGAAATGGGTATCTCAGATGAAGTCAAGGAACAACTTGAGCTAATGCACGTGCAACTCAAGCGAGCCAGGAGAAGAACTGATACACAGGACATAGAACTTGCAATGGATATGATGGTTGTGTTTTCTGATAATGATGACAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCTAAAAAGCTGGAGCTTCATAGTGTTGAGGATCTCAATATAGAAACATTGGCTATTAGGAACCTTGCTGCAGAAAGAAAAGGGCAACAGGCTGAGAGCACCCAGAAAATAATTTACCTTCTTAACAAATTCAAACGAATTGCAGGCATGGAAGAAACCGGCATCCTTGATGATCCTGCCGCACCCAAGATGCTTGAGAGGTGCACCTCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATTACACTAGAAATCATGACAGATCCTGTCATTGTAACAAGTGGACAGACATATGAAAGGGAAAGCATAAAGAAGTGGTTCCAATCCAACCATAACACATGCCCAAAGACCAGGCAACCTTTGGAACACTTGTCATTGGCACCAAACCGTGCCTTGAAAAGCTTGATTGAAGAATGGTGTGAGAACAACAACTTCAAACTTCCTAAAAAATACAATTCTTCAGGTCCAGAAAGCTGTCCTATAGACAGCAAAGAGGAAATTCCAGCTTTGGTTGAGAGCCTGTCATCTATTCATTTAGAAGAGCAGAGAAAAGCAGTGGAGAAGATACGTATGCTATCAAAGGAAAATCCCGAGAACAGAGTTTTGGTTGCTGAACATGGAGGAATACCACCTCTAGTGCAACTTTTGTCCTATCCAGATTCAAAAATACAAGAACATGCAGTAACAGCACTTTTGAATTTATCAATTGATGAGGGTAACAAGAGTCTTATATCCACAGAAGGTGCCATTCCAGCTATCATAGAAGTTTTGGAGAATGGTAGTTGTGTGGCTAAGGAGAACTCAGCCGCAGCTTTATTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTACCCGCCTTTGGTGGATTTGTTGAGGAATGGAACAATTAGAGGGAAGAAAGATGCTGTGACAGCTCTTTTTAACTTATCTATCAACCATGCAAATAAAGGTAGGGCCATTAGAGCTGGCATTGTGACACCCTTGCTTCAATTGCTCAAGGACAGAAACTTGGGCATGATTGATGAGGCTCTCTCCATTTTGTTACTCCTTGTATCAAATTCAGAAGCAAGACAAGAGATTGGACAACTTAGTTTTATTGAAACCCTTGTTGAGTTCATGAGAGAAGGGAGTCCAAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGCTCAAGTAACTCATCCTTTACATTGGCAGCACTTCAGTTTGGAGTGTATGAGTATTTAATGGAGATAAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAAATGCAATCTTAGATCTCATTAGCAGGAGCGAGCAAATTTAA 1908 0.4256 MTTMEEERDVSSDELSEEKYDPVEEIQRVIQSIVQFGEYRRTQRKESHNLVRRFKLMLPLWEELRDLPQPFPEIGVTWLSKVKDVLLFAKDLLKLCSQGSKIHLALETEVVMITFQKVYDKLSQAFGDVPCDEMGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDNDDRNADSAIIERLAKKLELHSVEDLNIETLAIRNLAAERKGQQAESTQKIIYLLNKFKRIAGMEETGILDDPAAPKMLERCTSLVIPHEFLCPITLEIMTDPVIVTSGQTYERESIKKWFQSNHNTCPKTRQPLEHLSLAPNRALKSLIEEWCENNNFKLPKKYNSSGPESCPIDSKEEIPALVESLSSIHLEEQRKAVEKIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKSLISTEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVGQSNGYPPLVDLLRNGTIRGKKDAVTALFNLSINHANKGRAIRAGIVTPLLQLLKDRNLGMIDEALSILLLLVSNSEARQEIGQLSFIETLVEFMREGSPKNKECAASVLLELCSSNSSFTLAALQFGVYEYLMEIKQNGTNRAQRKANAILDLISRSEQI* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1942 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Gso18g1942 635 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Gso18g1942 635 PANTHER U BOX DOMAIN-CONTAINING 16 633 - -
Gso18g1942 635 CDD RING-Ubox_PUB 266 308 IPR045210 -
Gso18g1942 635 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Gso18g1942 635 SUPERFAMILY ARM repeat 355 629 IPR016024 -
Gso18g1942 635 SMART arm_5 426 466 IPR000225 GO:0005515
Gso18g1942 635 SMART arm_5 385 425 IPR000225 GO:0005515
Gso18g1942 635 SMART arm_5 508 548 IPR000225 GO:0005515
Gso18g1942 635 SMART arm_5 467 507 IPR000225 GO:0005515
Gso18g1942 635 SMART arm_5 549 589 IPR000225 GO:0005515
Gso18g1942 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Gso18g1942 635 Gene3D - 348 453 IPR011989 -
Gso18g1942 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 336 IPR013083 -
Gso18g1942 635 Gene3D - 18 131 IPR036537 GO:0007166
Gso18g1942 635 Gene3D - 454 634 IPR011989 -
Gso18g1942 635 SUPERFAMILY RING/U-box 261 337 - -
Gso18g1942 635 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Gso18g1942 635 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 16 633 - -
Gso18g1942 635 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Gso18g1942 635 Pfam Armadillo/beta-catenin-like repeat 469 506 IPR000225 GO:0005515
Gso18g1942 635 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1942 Gso-Chr18 51915782 51919002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1942 23 635 U-box Gene Family AT5G42340 63.458 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1942 - - gmx:100789656 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1942 18 51915782 51919002 Gso9g2112 9 45422511 45424554 GST