Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1940 ATGGCTCTTGAGTCTGCTCCTGCTTCAGCTGACATCAGAGGAGTTCACACTCATGGTGGACGCTATGTTCAGTACAATATCTATGGAAACCTCTTTGAGGTCTCTAGGAAGTATGTTCCTCCTATTCGCCCTGTGGGAAGAGGAGCATATGGTATTGTTTGTGCTGCTGTAAATGCAGAGACACGTGAAGAAGTTGCCATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACTCTACGAGAAATTAAACTTCTTCGGCACATGGATCATGAAAATGTGATAGCCCTTAAAGACATTATACGACCACCACAGAGGGATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGTATTTTCTTTATCAGTTGCTACGAGGACTCAAATATGTACACTCAGCAAATGTTCTGCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATGCCAACTGTGATCTTAAGATTGCAGACTTTGGTCTCGCTAGAACTACATCTGAGACTGATTTCATGACTGAGTATGTGGTTACTCGGTGGTACCGAGCTCCAGAGTTACTTCTTAATTGCTCAGAATATACTGCCGCCATCGATATATGGTCTGTGGGTTGCATCCTTGGTGAAATCATAACAAGACAACCCCTATTTCCGGGGAAAGATTATGTTCATCAGCTCAGGCTGATTACAGAGTTAAAGAAGCTCTGTGTCACCCATACTTGGCACCTCTTCATGATATTAATGAGGAACCTGTTTGCGTTAGACCTTTCAGTTTTGATTTTGAGCAACCATCTTTCACTGAAGAAGATATCAAGGAACTCATCTGGAGAGAATCTGTGTTATTCAATCCTGATCCACCTATTTATTGAAATTTTGCATTTACTATCGTCTGTGCATAGTGAAAAATACTTTTTGACTGGATTACAACACTACCGAGGAGTTGTTGGTTCTCTACAGAAGTAA 1032 0.407 MALESAPASADIRGVHTHGGRYVQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVIALKDIIRPPQRDNFNDVYIVYELMDTDLHQIIRSNQQLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIADFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIITRQPLFPGKDYVHQLRLITELKKLCVTHTWHLFMILMRNLFALDLSVLILSNHLSLKKISRNSSGENLCYSILIHLFIEILHLLSSVHSEKYFLTGLQHYRGVVGSLQK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1940 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gso18g1940 343 SMART serkin_6 39 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1940 343 Gene3D Phosphorylase Kinase; domain 1 15 123 - -
Gso18g1940 343 ProSiteProfiles Protein kinase domain profile. 39 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1940 343 Gene3D Transferase(Phosphotransferase) domain 1 124 282 - -
Gso18g1940 343 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Gso18g1940 343 SUPERFAMILY Protein kinase-like (PK-like) 42 298 IPR011009 -
Gso18g1940 343 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 255 - -
Gso18g1940 343 Pfam Protein kinase domain 43 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1940 343 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gso18g1940 343 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1940 Gso-Chr18 51829628 51835214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1940 5 255 MAP Kinase Gene Family AT4G01370 88.048 5.18e-170 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gso18g1940 Pkinase 4.6e-63 CL0016