Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1938 ATGTCAATCTTCGACGGAGCTTTCATGAACACGCAACTCTCCAAGCACACTTCGATCTTCGGCCTCCGTCTCTGGGTCGTGATCGGAATTCTCATCGGAGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCCCTCTGCCTTGTCTCTCGCCGGAACCGCCGCCGCTCCGGCGCAGGCACCGGCTACAAGGTCGCCGGAGGCGCCGACGCGGCGAAGGACATCCACACGATCGTGCACCTTCCCGGGCCCCACATGCTCCGGCCTCCGGCGCCGGAGATCCACGTGGAGATGGGGAAGAAGACGGAGCACCGGGTGGTGGTGCAGTGCGATAGGGTTTCAAGTGAGGAGAGTAAGGTCACGGTGGGGAGTGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCCTGGGCCTGGGCTTGGGCCTGAGGTTTCACATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGGTTGAGTCCTGAAAATGTGGTTGGTGAAGGTGGCTATGGCATTGTCTATCATGGGGTACTCAATGATGGTACCAAAATTGCTGTCAAGAACCTCTTGAATAACAAGGGACAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTCGAGGGAGCCTACAGGATGCTTGTGTATGAGTATGTAGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGAGCTGTAAGCCCTTTGACATGGAACATACGGATGAACATTATATTGGGAACAGCAAGAGGATTGGCCTATCTTCATGAGGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTATGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGAACATTTGGTTATGTTGCACCAGAATATGCATGCACCGGAATGCTAACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATTACCGGAAGAAGCCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCTCTTAAACGCGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACCAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAAGCAGATGACCTGTTATTCCATACTGAACAAAGAACTGAGGGAGAGTCTTCCCGTTCCTATCAAAGTGAGCAAAGGGACTCAAATTTAGATAAGAGAAGAGATGGAGGTGCCATTGATAAAAGTGAAGATGCTAGTACTAGATGGAGATGA 1470 0.4871 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSGAGTGYKVAGGADAAKDIHTIVHLPGPHMLRPPAPEIHVEMGKKTEHRVVVQCDRVSSEESKVTVGSGCETTSSFGSGSVGGPGPGLGPEVSHLGWGRWYTLRELEDATGGLSPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHTEQRTEGESSRSYQSEQRDSNLDKRRDGGAIDKSEDASTRWR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1938 489 SMART serkin_6 168 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1938 489 ProSiteProfiles Protein kinase domain profile. 168 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1938 489 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 488 - -
Gso18g1938 489 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524
Gso18g1938 489 Gene3D Phosphorylase Kinase; domain 1 152 243 - -
Gso18g1938 489 Gene3D Transferase(Phosphotransferase) domain 1 244 456 - -
Gso18g1938 489 PANTHER OS01G0323000 PROTEIN 1 488 - -
Gso18g1938 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
Gso18g1938 489 MobiDBLite consensus disorder prediction 450 489 - -
Gso18g1938 489 CDD STKc_IRAK 174 440 - -
Gso18g1938 489 Pfam Protein kinase domain 171 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1938 489 SUPERFAMILY Protein kinase-like (PK-like) 146 440 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1938 Gso-Chr18 51812594 51816414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1938 105 463 Receptor kinase-like Gene Family AT4G02010 41.823 4.17e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso18g1938 Pkinase 9.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1938 - - gmx:100817295 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1938 18 51812594 51816414 Gso9g2108 9 45382260 45386123 GST
Gso18g1938 18 51812594 51816414 Gso7g0578 7 6131451 6134789 PCT
Gso18g1938 18 51812594 51816414 Gso16g0266 16 3047437 3051577 PCT
Gso7g0578 7 6131451 6134789 Gso18g1938 18 51812594 51816414 PCT
Gso16g0266 16 3047437 3051577 Gso18g1938 18 51812594 51816414 PCT