Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1935 ATGGCTACCGCTCCTTCGCTTCTACACTCATCTGGGTCCTCTTTTTTCTCTCAATTTCGTGCCTTTCAATTCTCTTCTTCTTCGCTGTTCCCTCATGGAAACAGGCATGGGAATGCCGTGGTCTCTGTGAAGGCCTCTGCTTCTGGGGTTGTGTTGGTGGAGAAGTCTGAGGCAGAGAAGGCCAATAGGCTCAAAACAGCTTACACTGAGAAAATTATTCCCTTGCTCATGGAAGAGTTCTCTTACACCAACAAACACCAGGTGCCTAAAATTGAGAAGATTGTGGTGAACTGTGGTATTGGAGATGCTGCGCAAAATGCAAAGGGTTTGGACGCGGCAATAAGTGATCTAGCACTGATCACAGGGCAGAGACCTATTAAGACTCGGGCCAGGGCTTCTCTTGCCACTTTTAAGATCAGGGAAGGTCAACCGCTTGGGATTGCTGTGACACTAAGAGGAAATATGATGTATTCATTCCTAGACCGAGTTATCAACCTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCCAACAGCTTTGATGGGCATGGGAACTACAGCATTGGCATTAAGGACCAGGGTGTGTTCCCAGAGATCAGAGCCGATGTTGTTGGTAAGCCTCGGGGAATGGATATCTGCATCGTGACGACGGCTAATACCGACCAAGAAGCACAGAAATTGTTAGCTCTTATGGGTATGCCCTTCAGAGAGGGAAGTGGTCCTGCCACGATAATTCGGAAAAAGAAGCTTAAGTCTCATCATTTTGATGCAAAATCAAAGGGAAGAGGAAGGAGGTGA 804 0.4739 MATAPSLLHSSGSSFFSQFRAFQFSSSSLFPHGNRHGNAVVSVKASASGVVLVEKSEAEKANRLKTAYTEKIIPLLMEEFSYTNKHQVPKIEKIVVNCGIGDAAQNAKGLDAAISDLALITGQRPIKTRARASLATFKIREGQPLGIAVTLRGNMMYSFLDRVINLGLPRTRDFQGVNPNSFDGHGNYSIGIKDQGVFPEIRADVVGKPRGMDICIVTTANTDQEAQKLLALMGMPFREGSGPATIIRKKKLKSHHFDAKSKGRGRR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1935 267 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 57 239 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gso18g1935 267 ProSitePatterns Ribosomal protein L5 signature. 117 133 IPR020929 GO:0003735|GO:0005840|GO:0006412
Gso18g1935 267 Hamap 50S ribosomal protein L5 [rplE]. 61 239 IPR020930 GO:0003735|GO:0005840|GO:0006412
Gso18g1935 267 Pfam ribosomal L5P family C-terminus 144 237 IPR031309 -
Gso18g1935 267 Gene3D - 55 239 IPR022803 -
Gso18g1935 267 Pfam Ribosomal protein L5 84 140 IPR031310 -
Gso18g1935 267 PANTHER 54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL 57 239 - -
Gso18g1935 267 SUPERFAMILY RL5-like 63 238 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1935 Gso-Chr18 51780421 51783650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1935 90 217 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 26.562 5.23e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1935 K02931 - gmx:100818896 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1935 18 51780421 51783650 Gso9g2106 9 45359614 45362862 GST