Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1933 ATGGTGTCCCTCAACCTCAACCCAAACCCACCTCAAACTTTTCACTTCTTCGACCCCTTCAACATGGAGGATCAGAATAAGAAGGTCCGAAAACCTTACACCATTACCAAGTCCAGAGAGAACTGGACCGACCAGGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTCGTCCAAAGAGAAAAGCTGCTCATCCCTACCCACAAAAGGCATCTAAAAATGCTCTTACTATATCCCAAGTTGCGCGGCCATTGCAATCTTCATCTGCTTTATCTGAATCATCACACATCTATAGGCCAGATTCATCATCTGTGGTTAGAACTCCAGTTAGCAGTGTGCCATTGCCATCTTGGGTTTATAATGTTACACCACCAGTCAGTCTTCCCCGAGTGACTAAAGATGATATGGTGTTGATGAGTCAACAAATCAATCCTTTCAGCAGTAGTAATGAGAGCACTCCTAGGGGTTGGCCAATTAGCAAACAGACAGATCAGGGTGACCAAGGCAAGCCAACTATAGTGATGCCAGATTTTGCACAAGTCTATAGCTTCATTGGCACTGTATTTGATCCAAATGCAATTAATCATCTACAGAGGCTGAAACAGATGGACCCAATAAATGTAAAAACTATATTGCTATTGATGAGAAACCTCTCCACCAATTTAAGGAGTCCTGAATTTGAGAATGAAAGAAGGATGCTGTCATTGTACTATGCTAACATGGAGAAGGAAAAATCCAGTAGTCATCGAAGCCAACCCCTCACTGACAGATCAGAGAGTGTTGTCTTATCTGCTTAA 924 0.4253 MVSLNLNPNPPQTFHFFDPFNMEDQNKKVRKPYTITKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISQVARPLQSSSALSESSHIYRPDSSSVVRTPVSSVPLPSWVYNVTPPVSLPRVTKDDMVLMSQQINPFSSSNESTPRGWPISKQTDQGDQGKPTIVMPDFAQVYSFIGTVFDPNAINHLQRLKQMDPINVKTILLLMRNLSTNLRSPEFENERRMLSLYYANMEKEKSSSHRSQPLTDRSESVVLSA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1933 307 SMART sant 38 86 IPR001005 -
Gso18g1933 307 CDD SANT 41 84 IPR001005 -
Gso18g1933 307 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Gso18g1933 307 MobiDBLite consensus disorder prediction 187 211 - -
Gso18g1933 307 MobiDBLite consensus disorder prediction 286 307 - -
Gso18g1933 307 PANTHER SWI/SNF COMPLEX-RELATED 10 300 - -
Gso18g1933 307 PANTHER MYB TRANSCRIPTION FACTOR 10 300 - -
Gso18g1933 307 Pfam Myb-like DNA-binding domain 39 84 IPR001005 -
Gso18g1933 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 37 86 IPR006447 GO:0003677
Gso18g1933 307 Gene3D - 41 89 - -
Gso18g1933 307 ProSiteProfiles SANT domain profile. 37 90 IPR017884 -
Gso18g1933 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 88 IPR017930 -
Gso18g1933 307 MobiDBLite consensus disorder prediction 89 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1933 Gso-Chr18 51762473 51767994 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso18g1933 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1933 - - gmx:100791774 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1933 18 51762473 51767994 Gso9g2104 9 45344816 45348839 GST
Gso18g1933 18 51762473 51767994 Gso7g0575 7 6099911 6106187 PCT
Gso18g1933 18 51762473 51767994 Gso16g0265 16 3034594 3042198 PCT
Gso7g0575 7 6099911 6106187 Gso18g1933 18 51762473 51767994 PCT
Gso16g0265 16 3034594 3042198 Gso18g1933 18 51762473 51767994 PCT