LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso18g1931	ATGTCTACTATTTCTGGTATGCCGCTTTTCTTTCTTTGTTGCTTGTATCTAATAATAGTAATATGTGAAGCCAGCTTCGGACCAAGTTATGAAAACTCCAAATACTGTAATAACAGTAATGGAAACTACACAGCCAATAGCATCTACCAAACCAACCTCAATACCCTCTTATCCACCCTCACTTCCCACACAGAAATCGACTATGGTTTCTACAATTTCTCGCATGGCCAAAACTCAGACAAAGTATACGCAATAGGGTTATGCAGAGGAGATGTTAAGCCAGACGAATGTCGCAGCTGCCTCAACAATTCTAGAGTGAGTCTCACACGGTTGTGTCCAAAGCAATTCGAGGCAATCAAGTGGGAAGAGAAGTGCATGTTGCGCTACTCCAACCGCGCAATTTTTCACACCATGGATGCTTCTTATTCGTATCCTATGAGCAACATAAACAATGCAACGGATGCGGAAGAGTTCAATAAAGTGTTGGGTGAGTTACTTAGAAATCTGAGTGACAAAGCTGCATCAGGTGACTCTCGGCGCAAGTATGCCGCGGATACTGCAGTCTTTGCGAATCTCCAAACCATATACGGTCTTGTGCAGTGTACGCCTGATTTGTCAAGGCAAGACTGCGGTGACTGCTTGCATTGGAGTTTGGCAGATTTCGGAAATGTTTTCAAAAACAAAGTTGGTGCTGTAGTGCTTAGACCAAGTTGTAATGTTAGATATGAAATCTACCCCTTCTACGATGAACCTACACCATCAGCATCGGTACCACTTTCCCTAAAAGAAAAGGGCAACTCACTGCGAACTACAATCGCCATAGTTGTGCCTACCGTTCTCGTTGTTGTTGCTTTGCTCATTTTCATTAGCATATATTTTAGGAGGAGGAAATTAGCAAGGAAAAATCTTCTCGCTGATGAAGACGATGATGAAATTGAATTGGCTGAATCATTGCAATTCAACTTGGACACAATAAAAGTTGCAACAAATAACTTCTCTGACTCTAATAAACTCGGAGAAGGTGGGTTTGGAGCTGTTTACCAGGGCAGGCTCTCTAATGGACAAGTGATTGCTGTCAAAAGGTTGTCAAGCGATTCTGGCCAAGGTGGCGTGGAATTTAAGAATGAAGTCCTTTTACTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTTAGTTTGGAAGGGAAAGAAAAGCTACTTGTTTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATCCAACAAAGAAAGCACGACTGGATTGGGATAGACGATACAAAATCATTCGAGGTATTGCTCGAGGTCTTCTTTATCTTCACGAGGATTCACGATTGCGCATTATACATCGTGATCTCAAAGCAAGCAATGTTCTCTTAGATGAAGAGATGATTCCTAAAATATCAGATTTTGGTATGGCAAGACTGATTGTTGCAGGTCAAACACAAGAAAATACAAGTCGAGTTGTTGGAACCTATGGATATATGGCACCAGAATATATAATGCATGGACAATTTTCAATAAAATCAGATGTCTTCAGTTTTGGTGTACTAGTTCTTGAGATTGTAAGTGGCCAAAAAAACCATGGTATTCGTCATGGGGAGAATGTGGAAGATCTACTAAACTTTGCATGGAGAAGCTGGCAAGAGGGGACAGTTACAAATATTATAGATCCAATATTAAACAATAGTTCACAGAATGAAATGATAAGATGCACCCACATTGGTTTACTCTGTGTTCAAGAAAATCTAGCCAACAGACCAACCATGGCTAACGTTGCACTCATGCTAAATAGTTGTTCTATCACTCTCCCAGTGCCTACAAAACCTGCTTTTTTTATGGATAGTGCAACTACAAGCCTTCCAAACATGTCATGGGAAGTTAATTCAGGGACAACACGATCGAATCAGTCCACAACCAAATCAGCTCACGACTCATTAAGTGAGGCTTCAATTTCTGAGCTATACCCTCGTTAG	1992	0.4081	MSTISGMPLFFLCCLYLIIVICEASFGPSYENSKYCNNSNGNYTANSIYQTNLNTLLSTLTSHTEIDYGFYNFSHGQNSDKVYAIGLCRGDVKPDECRSCLNNSRVSLTRLCPKQFEAIKWEEKCMLRYSNRAIFHTMDASYSYPMSNINNATDAEEFNKVLGELLRNLSDKAASGDSRRKYAADTAVFANLQTIYGLVQCTPDLSRQDCGDCLHWSLADFGNVFKNKVGAVVLRPSCNVRYEIYPFYDEPTPSASVPLSLKEKGNSLRTTIAIVVPTVLVVVALLIFISIYFRRRKLARKNLLADEDDDEIELAESLQFNLDTIKVATNNFSDSNKLGEGGFGAVYQGRLSNGQVIAVKRLSSDSGQGGVEFKNEVLLLAKLQHRNLVRLLGFSLEGKEKLLVYEFVPNKSLDYFIFDPTKKARLDWDRRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNVLLDEEMIPKISDFGMARLIVAGQTQENTSRVVGTYGYMAPEYIMHGQFSIKSDVFSFGVLVLEIVSGQKNHGIRHGENVEDLLNFAWRSWQEGTVTNIIDPILNNSSQNEMIRCTHIGLLCVQENLANRPTMANVALMLNSCSITLPVPTKPAFFMDSATTSLPNMSWEVNSGTTRSNQSTTKSAHDSLSEASISELYPR*	664

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso18g1931	663	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Gso18g1931	663	SMART	serkin_6	332	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g1931	663	ProSiteProfiles	Protein kinase domain profile.	332	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g1931	663	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	9	632	-	-
	Gso18g1931	663	Pfam	Salt stress response/antifungal	36	131	IPR002902	-
	Gso18g1931	663	Pfam	Salt stress response/antifungal	150	244	IPR002902	-
	Gso18g1931	663	CDD	STKc_IRAK	338	603	-	-
	Gso18g1931	663	SUPERFAMILY	Protein kinase-like (PK-like)	318	630	IPR011009	-
	Gso18g1931	663	Gene3D	Transferase(Phosphotransferase) domain 1	408	609	-	-
	Gso18g1931	663	ProSiteProfiles	Gnk2-homologous domain profile.	31	134	IPR002902	-
	Gso18g1931	663	Pfam	Protein tyrosine and serine/threonine kinase	335	598	IPR001245	GO:0004672\|GO:0006468
	Gso18g1931	663	MobiDBLite	consensus disorder prediction	629	654	-	-
	Gso18g1931	663	Gene3D	-	139	247	IPR038408	-
	Gso18g1931	663	Gene3D	-	31	133	IPR038408	-
	Gso18g1931	663	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	9	632	-	-
	Gso18g1931	663	Gene3D	Phosphorylase Kinase; domain 1	296	407	-	-
	Gso18g1931	663	MobiDBLite	consensus disorder prediction	629	663	-	-
	Gso18g1931	663	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Gso18g1931	663	ProSiteProfiles	Gnk2-homologous domain profile.	140	247	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso18g1931	Gso-Chr18	51737977	51742193	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso18g1931	9	663	Receptor kinase-like Gene Family	AT4G21410	47.307	0.0	593

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso18g1931		PK_Tyr_Ser-Thr	1.2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso18g1931	-		-	gmx:100775428	1277.31