Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1927 ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTTACATCATCCTCAGTGTCTTCTTCTTCATCTCCTTCTTCCTCTGGTTTTGCCTCTTCTTACTTCCACCCTGAAGCTGCAGTTTCTTCTTCTTCTTCTTCCTATTCTGGCTTCAACATCTTCAAGGGTGAACAAGGAATAAGCCAAGTTTTGTCGCTCTCTGCGTACCCCTTTGAGGCAAGGAGCTCCATTGAGGAATTGCATGAGCTTTGCAAACCTTTCTTCTCCAAATCTCAGCCTCTAACGTTGCAAGCCTCTTCACCTTTGTCCTCACTCTCTTCCTATTCCTCTGCGCCACCCAAATCTGTTTCAACGCAAGAGAAACAACAACAGAGGAGCAAGCAGGCACATGCTGTCACCACCCCACGATCTAAAAGAAGAAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCATATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAAAGAAACAGATCAGACCCAACAATGTTTATAGTGACTTACACTGCTGAGCACAACCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGTCAGAAGCCATTGGTACCTCAAACAGCCACCACCACTGAAGAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCACTTCCCCTGCCACCTCAGGGGCAGAAGAAGAGGCTCCAACACCATCACAAGGGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGGCTTGTCTGATATGGTGCTTTCAGATGACTTCTTTGAAAGTTTGGATGAACTGAGCCAACTTACGGCTCCTTCTGTTGTCACTGGAGACTGTTTCAGTGACCCCTTTTCAGCAATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTAGTGGGTGTAGATGA 1056 0.4754 MAEDWDLHAVVRGCSTVTSSSVSSSSSPSSSGFASSYFHPEAAVSSSSSSYSGFNIFKGEQGISQVLSLSAYPFEARSSIEELHELCKPFFSKSQPLTLQASSPLSSLSSYSSAPPKSVSTQEKQQQRSKQAHAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLVPQTATTTEEDSDKSKSLTKPTSPATSGAEEEAPTPSQGEKSESREEKEDVMDDEEEDEFGLSDMVLSDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATASGCR* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1927 351 MobiDBLite consensus disorder prediction 217 243 - -
Gso18g1927 351 Gene3D WRKY domain 143 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1927 351 MobiDBLite consensus disorder prediction 108 134 - -
Gso18g1927 351 MobiDBLite consensus disorder prediction 214 299 - -
Gso18g1927 351 MobiDBLite consensus disorder prediction 284 299 - -
Gso18g1927 351 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 341 - -
Gso18g1927 351 MobiDBLite consensus disorder prediction 253 268 - -
Gso18g1927 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 341 IPR044810 GO:0003700
Gso18g1927 351 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1927 351 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1927 351 SUPERFAMILY WRKY DNA-binding domain 157 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1927 351 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1927 351 MobiDBLite consensus disorder prediction 108 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1927 Gso-Chr18 51669229 51671455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1927 1 349 WRKY Transcription Factor Family AT4G01250 48.459 9.63e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso18g1927 WRKY 3.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1927 18 51669229 51671455 Gso9g2100 9 45276056 45278277 GST
Gso18g1927 18 51669229 51671455 Gso16g0260 16 2970159 2972172 PCT
Gso16g0260 16 2970159 2972172 Gso18g1927 18 51669229 51671455 PCT