Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1915 ATGTCCTCTGATCACTTCCCCCACCTCGGCCTCGGCTACTCCATCGCCATAGCCCTCGCCTTCCTCTTCCTCCTCTCCACACTCCTCCTCTCCTCCTACCTATGCTGCCGCCACAACCGCCGCCGCCACACCCAAACCACCGCCTCCGCCGCCGCCTCCGACGGCGGCATCGTCCTGCCACGTGTCATATTCGTGGCGGAGGACGATGACGAGGATGCCGATGCCTGCATGGTGGTGGGGCTCGACCAGAGCGTGATAAACTCGTACCCAAGGTTCCAGTTTAACAAGGACAGCGATGCGCGGAATATTATTAACACCACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGCCGCCATTACTTCCACCTATGTTGTCTCGATTCGTGGCTGAAGCTCAATGGCTCTTGCCCCGTTTGCAGAAACTCGCCGCTCCCGACGCCGCTTTCTACGCCGCTGCAGGAGGTGGTGCCGCTCTCTCAGTATGCTGCTGATAGGAGAAGAAATAGGTGA 540 0.5833 MSSDHFPHLGLGYSIAIALAFLFLLSTLLLSSYLCCRHNRRRHTQTTASAAASDGGIVLPRVIFVAEDDDEDADACMVVGLDQSVINSYPRFQFNKDSDARNIINTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRNR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1915 179 SMART ring_2 108 149 IPR001841 -
Gso18g1915 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 154 IPR013083 -
Gso18g1915 179 PANTHER RING-H2 FINGER PROTEIN ATL67 5 177 - -
Gso18g1915 179 PANTHER RING-H2 FINGER PROTEIN ATL67 5 177 IPR044289 GO:0016567|GO:0016740
Gso18g1915 179 SUPERFAMILY RING/U-box 88 155 - -
Gso18g1915 179 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gso18g1915 179 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1915 Gso-Chr18 51571528 51572720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1915 9 169 C3H Transcription Factor Family AT5G07040 41.615 2.64e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1915 - - gmx:100778633 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1915 18 51571528 51572720 Gso9g2088 9 45197749 45198975 GST
Gso18g1915 18 51571528 51572720 Gso7g0553 7 5605876 5607125 PCT
Gso18g1915 18 51571528 51572720 Gso16g0252 16 2908503 2909661 PCT