Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1902 ATGGTTTCCCTTTCCACCACCCCTTTTCTTCCCTTCACTGCAAAAAATGCTTCTACTAGAATCCCTCCTCCCACATCATTCTCTTACAGCAAGCAACGTAGTAACAGGGATCCCAGGAAGGTTGTCTGCGCCTGCATCGCTCCTCCTCAAAACTTCAAGAGCCAGGACTCTTCCGCCATTCATTTCAATGGTTCGTCCAAATCAGAGCAATTGAGCACTGCGCGGGATCATGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGACGTGTACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAAGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAGGGGGAAGTTTATATTCGAGGTAAAAAGAGAGTTGGTTTAGTAAGCGATGATGACATATCTGGTCTTCGGATTGGATTGGTTTTCCAAAGTGCTGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGATCAGATATCAGAGCTTGTCACGGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTTGAGGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACTACAAAGGAATCAATAGAGCCAGAGGTGCTCTTGTATGACGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAAGATCTGATTCGCTCTGTGCACATAAAAGGACAAGATGCACGTGGAAAACCTGGGAATATTTCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAGTTTGCATCCGGGAGCCTTGATGGTCCTATCAGATATTAG 1038 0.4306 MVSLSTTPFLPFTAKNASTRIPPPTSFSYSKQRSNRDPRKVVCACIAPPQNFKSQDSSAIHFNGSSKSEQLSTARDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIKHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDDISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISELVTETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDARGKPGNISSYVVVTHQHSTIKRAIDRLLFLHKGKIVWEGMTHEFTTSTNPIVQQFASGSLDGPIRY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1902 345 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Gso18g1902 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 326 IPR027417 -
Gso18g1902 345 Gene3D - 71 337 IPR027417 -
Gso18g1902 345 MobiDBLite consensus disorder prediction 15 34 - -
Gso18g1902 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 31 345 - -
Gso18g1902 345 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524
Gso18g1902 345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Gso18g1902 345 CDD ABC_Org_Solvent_Resistant 85 334 - -
Gso18g1902 345 SMART AAA_5 109 313 IPR003593 -
Gso18g1902 345 MobiDBLite consensus disorder prediction 15 32 - -
Gso18g1902 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 31 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1902 Gso-Chr18 51434497 51440267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1902 91 329 Calmodulin-binding Proteins AT2G36910 28.346 1.83e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1902 - - gmx:100783283 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1902 18 51434497 51440267 Gso9g2076 9 45094624 45099666 GST