Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1891 ATGGGAATGATAGTGGATTTTGAAAATGACCAAAACGACGCCGTTCTGGTTCCGCCCCCTAACTTCGCCATGGTTGAAGACTGCGTTTTCCGATCCAGCTTCCCCACCCCTTCCAATTTCCCCTTTCTCCAAACCCTAAACCTTCGCTCCATCATATACCTGTGCCCCGAGCCTTATCCGGAAGAAAATCTCGAGTTCCTCCGCTCGCAGAATATTCGCCTCTTTCAATTTGGAATTGAGGGGAAAACGGACGTTTCTATGCCTGTTCTCAAGGATTCTATCATGGATGCACTGAAAGTTTTAATTGATGTGAGAAATCACCCCATTTTGGTTCATTGCAAGCGAGGAAAGCATAGAACAGGTTGCCTAGTTGGTTGCTTGCGAAAATTACAGAACTGGTGTTTGTCCTCTGTGTTTGAGGAGTACCAACGATTTGCTGGTGCTAAATCCAGGACAACGGATTTAACATTCATAGAAATGTTTGATGTTCTAAGTCTGAGTCAGTGCCTTTACAGCATCATCTACCAGTACCATGGTTCAAAGAAGCGTCGGTTGTTGTATAAAGATGAAAACTTACAGAAGCCCCGACTGACATCATTTTAG 603 0.4444 MGMIVDFENDQNDAVLVPPPNFAMVEDCVFRSSFPTPSNFPFLQTLNLRSIIYLCPEPYPEENLEFLRSQNIRLFQFGIEGKTDVSMPVLKDSIMDALKVLIDVRNHPILVHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRTTDLTFIEMFDVLSLSQCLYSIIYQYHGSKKRRLLYKDENLQKPRLTSF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1891 200 PRINTS Plant and fungal dual specificity phosphatase signature 16 33 IPR020428 GO:0016791
Gso18g1891 200 PRINTS Plant and fungal dual specificity phosphatase signature 53 66 IPR020428 GO:0016791
Gso18g1891 200 PRINTS Plant and fungal dual specificity phosphatase signature 72 86 IPR020428 GO:0016791
Gso18g1891 200 PRINTS Plant and fungal dual specificity phosphatase signature 89 103 IPR020428 GO:0016791
Gso18g1891 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 184 - -
Gso18g1891 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 111 121 IPR016130 GO:0016311|GO:0016791
Gso18g1891 200 Gene3D Protein tyrosine phosphatase superfamily 15 165 IPR029021 -
Gso18g1891 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 11 184 - -
Gso18g1891 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 163 IPR029021 -
Gso18g1891 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 21 170 IPR020422 GO:0006470|GO:0008138
Gso18g1891 200 Pfam Tyrosine phosphatase family 16 163 IPR004861 -
Gso18g1891 200 CDD PFA-DSP_Siw14 16 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1891 Gso-Chr18 51348283 51351332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1891 9 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.474 9.00e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1891 K18045 - gmx:100787713 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1891 18 51348283 51351332 Gso9g2064 9 45001983 45004863 GST