Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1888 ATGGAACAAGACAACCTTAACAACAATTGTGATGAGGAAAACTTTGTGTCTGACTCGAGAGGAAGAAAAAGAAGCATTGCTGAGAGAAGGGGTTTCAATTCCAATGCTGCAAGAATCAACACAGCACTGTTTCGCACTGCAACAACTTCAACAACAACCCCTTCACCGTCCCCTGCTGCTCGATCACCTCGTCTCACCATTCCCCCCGGAATTAGTCCCACTGCCTTGCTTGACTCTCCCATCATGCTTCCAAATTCTCAGGCCATATCTCCCACCGTTGGCTCTTTCTTCACGCTGCCACTTCTCAGCCATGAAGGATCAATGCTCACAACTGAACAAGGGAATGTGGATGTGTCAACCGCATTTGATGTCGCCGCCTCTTTCAAATTCAAGCCTCGTGGACATTTGGATCCTAATCCTTTGCCTCCTTTCACTGCTTCTCTAAATCAGGTTTCTAGTCATTTCCACTCAGTAAAGGGAGAAAATAGAGAGAGCCACCTACTTGCTCAAGTTCAGCCACCATTAGATTTTTCATGCCAAGCAGATTTTTCAAAAGGCCATTCTGTGAAAAATAGTGAAGTGAATTCGTACAATGATATGAAAATGGTAAATGATGCGATTGTTAATGCCAATAATGTTGAGATGCCAATGTCTGGCTCTGAGGAAGTAAGTGATGAAAGCGCTATGCTGAAAAATGCTATCAATGGTGAGGATTTCGGAGGGCAACCTGCTTCAGAAGGAGAACAGAAAGAGGTATCCCATGCAACGGGAGCAGTAAGGACTTCAGAGGATGGCTATAATTGGAGGAAATATGGACAAAAACAGGTTAAAGGTAGTGAGTATCCCAGAAGCTATTATAAATGCACACAGCCTAATTGTCAGGTCAAGAAAAAGGTGGAACGATCCCATGACGGTCAAATAACGGAAATTATTTACAAGGGTGCTCATAACCATGCACAACCACACCCCGGACATCGAGCATCTTCACTTTCTACTGATGAGGTTTCAGACATGGCTGAAGACAGTACCTTAGCTAAAATTGAAGGTGGGTATGTCTGGAGAAATATTCAAACAGGATTAAAAGATACAAAACAAAGTTTTGATTGGAAGGCTGATGGACAGGAAAGGACATCATCAACTTCTGCTGTGACTGAGCTTTCAGATCCTATATCAACTAACAAAGCTAAATCTCTACGTATATTTGAATTGGAGGACACTCCAGAGCTTTCTTCTACACTTGCCAGTCATGATGATGATGAAGATGGGACCGCTCATGCACTTGTGTCGGCTGAAGACGAAGCTGAGAATGATGAATTGGAACCGAAAATAAGGAAGAAAGAGAGCTATGCAGTTGAACCAAATTTGCCCCCTACTAGGGCTGTTCGAGAGCCAAGAGTGGTTGTCCAAATTGAGAGTGATGTGGACATACTTGATGATGGTTACCGCTGGCGTAAGTATGGACAAAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGTACAAGTACTGGATGTATGGTAAGGAAACATGTGGAAAGGGCTTCACACAATCTGAAATATGTCCTTACTACTTATGAGGGAAAGCATAACCATGAAGTGCCCACTGCTAGAACCAACAATCAGGTAAACTCAAGTGATGGTGGTTTACCTCCCAATGGTGCTAATGGACAAGTTTCTCTTACATTACCAGGGAGTGCTGGCATTCCAAAGCCCGAAACTCATCAAACTCTTGGACATCATTTTGATAGAAAACCGGAATTCAGCGACGAGTTTCTCAGGCCTAGTTTGGTTGGAAGTTTCGGGAATGATATGAAGTTTCGGCCTTCTTCCCTTTGCCAAATGAAGTATCCTTCCTTGAATAACGCCATGCCATATGGCTCCTATGGACTGAACCCTGAACGTTGCACTGCCCCTCAAGCTGGATCCATTCCCTCCATGTTCCCTGATTTTCCAATGCCACTTCCATTGAATCTTCCCTCATCTGGAAATTTTTCAATTGCTGGACTGAATTTTAACCGTGTCAAGCCAATGAATCCGGACCAGTCTTTCCTTTCTGGGCAGCAGGTGAAGGACATTGATACAGGGTTCCTGAGGCCTAAACAAGAACAGAAGGATGATACTATGTACGGCTCGTGCATGCCCCCGCTAGATCATGCAAATGCTTCACTCACTTCTTCACCATCACCATCCATTTATCAACGCGTCATGCACAATTTCCCTTCATAA 2235 0.4389 MEQDNLNNNCDEENFVSDSRGRKRSIAERRGFNSNAARINTALFRTATTSTTTPSPSPAARSPRLTIPPGISPTALLDSPIMLPNSQAISPTVGSFFTLPLLSHEGSMLTTEQGNVDVSTAFDVAASFKFKPRGHLDPNPLPPFTASLNQVSSHFHSVKGENRESHLLAQVQPPLDFSCQADFSKGHSVKNSEVNSYNDMKMVNDAIVNANNVEMPMSGSEEVSDESAMLKNAINGEDFGGQPASEGEQKEVSHATGAVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGAHNHAQPHPGHRASSLSTDEVSDMAEDSTLAKIEGGYVWRNIQTGLKDTKQSFDWKADGQERTSSTSAVTELSDPISTNKAKSLRIFELEDTPELSSTLASHDDDEDGTAHALVSAEDEAENDELEPKIRKKESYAVEPNLPPTRAVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCMVRKHVERASHNLKYVLTTYEGKHNHEVPTARTNNQVNSSDGGLPPNGANGQVSLTLPGSAGIPKPETHQTLGHHFDRKPEFSDEFLRPSLVGSFGNDMKFRPSSLCQMKYPSLNNAMPYGSYGLNPERCTAPQAGSIPSMFPDFPMPLPLNLPSSGNFSIAGLNFNRVKPMNPDQSFLSGQQVKDIDTGFLRPKQEQKDDTMYGSCMPPLDHANASLTSSPSPSIYQRVMHNFPS* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1888 744 SUPERFAMILY WRKY DNA-binding domain 259 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 Gene3D WRKY domain 248 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 SMART WRKY_cls 477 536 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 SMART WRKY_cls 262 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 ProSiteProfiles WRKY domain profile. 472 537 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 SUPERFAMILY WRKY DNA-binding domain 470 537 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 MobiDBLite consensus disorder prediction 536 556 - -
Gso18g1888 744 Gene3D WRKY domain 464 530 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 MobiDBLite consensus disorder prediction 43 67 - -
Gso18g1888 744 MobiDBLite consensus disorder prediction 537 556 - -
Gso18g1888 744 MobiDBLite consensus disorder prediction 15 29 - -
Gso18g1888 744 MobiDBLite consensus disorder prediction 411 446 - -
Gso18g1888 744 MobiDBLite consensus disorder prediction 409 446 - -
Gso18g1888 744 MobiDBLite consensus disorder prediction 43 60 - -
Gso18g1888 744 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 7 719 - -
Gso18g1888 744 Pfam WRKY DNA -binding domain 263 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 Pfam WRKY DNA -binding domain 478 535 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g1888 744 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 719 IPR044810 GO:0003700
Gso18g1888 744 MobiDBLite consensus disorder prediction 238 260 - -
Gso18g1888 744 MobiDBLite consensus disorder prediction 1 29 - -
Gso18g1888 744 ProSiteProfiles WRKY domain profile. 257 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1888 Gso-Chr18 51328199 51332272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1888 21 540 WRKY Transcription Factor Family AT5G56270 40.842 2.22e-97 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso18g1888 WRKY 9.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1888 K18835 - gmx:100800211 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1888 18 51328199 51332272 Gso9g2062 9 44988262 44992365 GST