Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1884 ATGCCGGTTTACATCATGGGAGATCATGTAACTGTCTCGACCACTCAACAACACATTGCAATCCCCATTGAGAAATTGAATGCATTATCACTTGAAGTTGCAAAGGAAGAAAAACATGTAACCGATGATGCCTATGTGGACAATGTCCAAAAACCTGAAGAGAAAGATGAAGAAACTCAAGAAAAGGGAGATTGTCGCTACTGTCAAGAAGAGGACTTTATTTTTAATATGGAATCACCCTGCAATTGCAATGGTAGCGTGAAGTATGTTCACAAGAGATGCATTGATCAATGGTACAATTCCAAAGGCCGCATGATATTATGTGAGATTTGCAGGAAGCCTTACAATCCAAATGATTACCCACTTCCGGAACTTCATTATGATGATGATGACACCGAGATAACTATATTAAGGGAGGAATGGACTATTCCTGGAACCAGCACTGAAATTTGGTCACCTTTGGTGCTGGCAGACCGTGCCACCAAGGGCCTCATTGATTCAATGAACAAAGACTTCAGCTTGAAAAACCCTAGTGGAGGTGTGATATTTGGCATGTCACTCGTCATCGCTGTGATGACTATCTCTGTGCCAGTTTACATTTTATCGTGGGTTTTACAGTGCCAAGCCTATAGAAAAAGCGAGAGAGGGAGGGAAAGAGAAAGACATCGCAATGCATAG 678 0.4189 MPVYIMGDHVTVSTTQQHIAIPIEKLNALSLEVAKEEKHVTDDAYVDNVQKPEEKDEETQEKGDCRYCQEEDFIFNMESPCNCNGSVKYVHKRCIDQWYNSKGRMILCEICRKPYNPNDYPLPELHYDDDDTEITILREEWTIPGTSTEIWSPLVLADRATKGLIDSMNKDFSLKNPSGGVIFGMSLVIAVMTISVPVYILSWVLQCQAYRKSERGRERERHRNA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1884 225 Pfam RING-variant domain 65 111 IPR011016 GO:0008270
Gso18g1884 225 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 194 - -
Gso18g1884 225 ProSiteProfiles Zinc finger RING-CH-type profile. 57 118 IPR011016 GO:0008270
Gso18g1884 225 SMART ringv_2 64 112 IPR011016 GO:0008270
Gso18g1884 225 CDD RING_CH-C4HC3_MARCH 65 112 - -
Gso18g1884 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 120 IPR013083 -
Gso18g1884 225 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 194 IPR033275 -
Gso18g1884 225 SUPERFAMILY RING/U-box 62 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1884 Gso-Chr18 51298527 51302889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1884 51 115 C3H Transcription Factor Family AT2G22120 38.356 3.40e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1884 - - gmx:100800745 469.929