Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1883 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGACCGCCACCCATACTCTATAATAGAGTGTGAGCCTAAGCGTGAAGTCATTTTACCATCTGTAATCTACATACAAAAGATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTTATGCGGAAATTCCTTCAGTCCTTGGAACTTTTCGAGGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCACTTGCTTTCTCTCAGAAGCTGTCTGGTCTCCCACCAGAAACTGTGTTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTAAAACGGGGAAAAGTAGAGGAGGATCTTTTGGACATTTTCCCCCCTACAAAAAGATCCATTGAAGCTTTCTCTGAGCATTTCACCAAGGAAGGATTGGTGGCCTTGGTGGAGTATAATGAAAAGAAAATTTTTGAGGTGAAACTTAAGGAAATGAAGTCTTCTTTAACAGCACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGCTGCGAGTTAGAGATGCTAAATTGCCGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACTTGAGCTGGAGCTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAA 1236 0.4377 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVAFTGGRTQPGTTKPDEGDRHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEEDLLDIFPPTKRSIEAFSEHFTKEGLVALVEYNEKKIFEVKLKEMKSSLTAQITEEADTSEVIETVKLRVRDAKLPEIEVVRILWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNSKGRQTFVKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1883 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Gso18g1883 411 Gene3D - 243 411 - -
Gso18g1883 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 - -
Gso18g1883 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Gso18g1883 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Gso18g1883 411 SUPERFAMILY ARM repeat 252 408 IPR016024 -
Gso18g1883 411 Coils Coil 121 141 - -
Gso18g1883 411 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 411 - -
Gso18g1883 411 SMART 542_3 325 410 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1883 Gso-Chr18 51291818 51296494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1883 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 3.62e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1883 - - gmx:100789838 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1883 18 51291818 51296494 Gso9g2057 9 44954699 44959253 GST