Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1868 ATGGATCATATCGTGGCTGCAAGGTCTGATCATGAAGCTGTGACTGAATGGGAGAAGCTAAAGATATTGGGAGAGGGTTCTTATGGAACCGTCTCCCTAGCTGTGCTTACTGCCCCGGAAGAAGCAAAAGGAGAGCTAATAGCTGTCAAGACTTCAAAGCCTCACGGTTTAGATTCATTGCAGAAAGAAGAAACCATATTAGATTCATTCTTTGGCTGCAAAGAAATTCTCCGATGCATTTGGAGCCTATTCACCTTGGAGAATGGTCGTTTTGTCTACAATCTCCTCATGGAGTTTGCCCCTTGCGGTTCTCTGGGAGACTTGATCAGAAAGAAACCACTCTCGGAGAGCCAAGTGAGAGTATACTCACGCATGCTTCTCAAAGGGCTTTCTCTCGTTCATCGATTCGGGGTCGTTCATTGCGATTTGAAACCAGACAACATTCTTCTCTTTCCTTCGGGCGAGGAGAATGATGTGGATTATCAACTCAAGATCGCGGATTTCGGACTTTCAAGGACCAAAGACGAGGTGTTTGATGCAGACTTTTGGAAGATCAAGTTCAGAGGCTCCCCATTTTACATGTCACCGGAATCCGTCATGGGCCGAATCGAAACACCATTGGATATATGGTCTCTTGGGTGCTTGGTAATCGAGATGATGACCGGGTTTCCAGCATGGAACCACATTCCTACCACAAGGGACTTGATGTTCAAACTTGCATTCCTCAAAGAAGCACCACCGTTGCCTTCTGGGCTGAGTTCTCTTTGCCAAGATTTCTTGAACAAGTGTTTCGTCAAGGATTCTGCTCAGAGATGGACGGCCAACATGCTTCTCGACCATCCTTTTATTTCTGCTGCAAAATCATACATGTGA 873 0.4593 MDHIVAARSDHEAVTEWEKLKILGEGSYGTVSLAVLTAPEEAKGELIAVKTSKPHGLDSLQKEETILDSFFGCKEILRCIWSLFTLENGRFVYNLLMEFAPCGSLGDLIRKKPLSESQVRVYSRMLLKGLSLVHRFGVVHCDLKPDNILLFPSGEENDVDYQLKIADFGLSRTKDEVFDADFWKIKFRGSPFYMSPESVMGRIETPLDIWSLGCLVIEMMTGFPAWNHIPTTRDLMFKLAFLKEAPPLPSGLSSLCQDFLNKCFVKDSAQRWTANMLLDHPFISAAKSYM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1868 290 ProSiteProfiles Protein kinase domain profile. 17 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1868 290 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 16 287 - -
Gso18g1868 290 SMART serkin_6 17 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1868 290 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Gso18g1868 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gso18g1868 290 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 16 287 - -
Gso18g1868 290 Gene3D Transferase(Phosphotransferase) domain 1 7 290 - -
Gso18g1868 290 CDD STKc_MAPKKK 16 283 - -
Gso18g1868 290 Pfam Protein kinase domain 18 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1868 290 SUPERFAMILY Protein kinase-like (PK-like) 12 284 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1868 Gso-Chr18 51170181 51171053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1868 16 284 MAP Kinase Kinase Kinase AT4G36950 41.367 3.93e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso18g1868 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1868 - - gmx:102667952 592.038