Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1851 ATGGAGGATTCGTTGGAGAATTGGATTTCACAGTTGGAAATGGAAGAATATCATGATGGGTCATTTGATGAGGAAGAGTTCCTAAGAGAGATCCTTAAGGAGGAGCAGCAGCCAGAAAATTTGTGGCCTCAAAGAGATCAAAAGCTCTCCAACACCAGCCCCACTAACAGCACTGTGTCCTTTGATGAGGCAATTAGCTTTTGTGGGAGTGGCACTCTACATAAAAGCAACAGCTCCAACTCCATCAAGTCTTTGAAAAGATCATCATCAAGTGTCTCACCAGCCACCACTACATACCTTCTTTCTTTTGATACCTCAAGTGCTAAACCAATCACACTTAAACCTTCCCCTAAGCTTGATTTGGCACTTGGATCATCCAATAAAAGGAGTACTAGTACTGTAACTGTGGTGAAAGATGGGTGTGAATTTGAACCATTGATGATGCCCCAAAGCCAAGCAAGGAAGAAGGTTAGAAGGTCATGTGAGACACAGCATCACATTATTGCTGAGAGGAAAAGGAGACAGGAACTGACAGGGAGCATTATAGCACTTGCAGCAGCTATTCCTGGGCTCAAGAGGATGGACAAGGCTTATGTGCTTCGTGAAGCTGTCAATTACACAAAACAACTTCAAGAGCGAGTTAAAGAGTTGGAAAATCAAAACAAAGTAGATTCAGCAACATTCATAAGGAAATCTCAAGCTTCCTCACATTGTGAAACGAACAAAGAAATATCACTATTTGAGGTTGAAGCAAGAGTCTTAGATGAGGAAGTACTCATTGGAATCCATTGTGAGAAACAAAAGGACATAGTGTTCAAAATACATGCCTTGCTTGGAAAGCTCCATCTCTCTACAACCAGTAGCACCGTACTGCCATTTGGGACTTCTACTCTTATAATCAACATTATTGCTCAGATGAATGGCGAAAACAGCATGACCATGCATGACCTAGTGAAAAAACTGAGAGATTATCTATTGGAGGTGTATGACATGCAATAG 999 0.4154 MEDSLENWISQLEMEEYHDGSFDEEEFLREILKEEQQPENLWPQRDQKLSNTSPTNSTVSFDEAISFCGSGTLHKSNSSNSIKSLKRSSSSVSPATTTYLLSFDTSSAKPITLKPSPKLDLALGSSNKRSTSTVTVVKDGCEFEPLMMPQSQARKKVRRSCETQHHIIAERKRRQELTGSIIALAAAIPGLKRMDKAYVLREAVNYTKQLQERVKELENQNKVDSATFIRKSQASSHCETNKEISLFEVEARVLDEEVLIGIHCEKQKDIVFKIHALLGKLHLSTTSSTVLPFGTSTLIINIIAQMNGENSMTMHDLVKKLRDYLLEVYDMQ* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1851 332 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Gso18g1851 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Gso18g1851 332 Gene3D - 150 224 IPR036638 GO:0046983
Gso18g1851 332 MobiDBLite consensus disorder prediction 34 56 - -
Gso18g1851 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 227 IPR036638 GO:0046983
Gso18g1851 332 SMART finulus 167 216 IPR011598 GO:0046983
Gso18g1851 332 MobiDBLite consensus disorder prediction 42 56 - -
Gso18g1851 332 PANTHER BHLH TRANSCRIPTION FACTOR 4 331 - -
Gso18g1851 332 Coils Coil 200 227 - -
Gso18g1851 332 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1851 Gso-Chr18 51009237 51013630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1851 8 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.628 6.04e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g1851 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1851 - - gmx:100806078 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1851 18 51009237 51013630 Gso9g2030 9 44717415 44720296 GST