Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1850 ATGGAGGATTCATGGGTGGACTTGTTTTCTAACTGGGAAATGGGTGGTGATGATTTCTTCAATATTCAAAGCCATGGCCACATGAGCCCTTTCAATGAAGAAGAGTACTCCTCGGGAGAGAGAGACATGATTGTTCAGCAACAAGTTTTCTCTCCCAATCTCTCTTCTTCCTCCCTTCAAAGCAACTTGGAATTACCTTACTCATCATCTCCAACGGGTAACGTTTTGTCTTTTGATAACCCCCTTGTAGGATCACTTCACCCTCAAAATGACTCCGCTAAAAGCATGGAACAAAGCCATTGCGTTGAACCAAAGGCGTACCCACGAACAAACGCACAAGTTCACATACTGGCCGAGAGAAAAAGGAGAGAGGAGCTGACTAGGTGCATCATAGCACTTTCAGCCACCATTCCTGGCTTAAAGAAGACAGACAAGGTCACTGTACTGCGTGAAGCTGTGAACTATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTAGAAAATCAAATGAGGAAGGAATGTGTGAATTCAATAATACTTACCAAGAAAGCGCTAATTTGCAAAAATGATCGTGTGGAAGAACTCCTCGAGGTGAAAGTAACTGTGTTAGATAAGGAAGTGCTCATTGGAGTCCATTGTGAGAAACAAAGAAAATCTTTGCTCAAAATATTGTCCTTGCTTAATAATCTCCATCTTTCTATAACCAGTACCAGCGTATTGCCATTTGGGAGTTCCACTCTTAAGATTACCATTATCTCTCAGATGGATGACGAATATAACATGACACTTGATGATCTAGTAAGAACACTGCGTCAACGCATATTGAGTTTGAAGTCACACGATACGTAA 849 0.4158 MEDSWVDLFSNWEMGGDDFFNIQSHGHMSPFNEEEYSSGERDMIVQQQVFSPNLSSSSLQSNLELPYSSSPTGNVLSFDNPLVGSLHPQNDSAKSMEQSHCVEPKAYPRTNAQVHILAERKRREELTRCIIALSATIPGLKKTDKVTVLREAVNYVKQLQERVKELENQMRKECVNSIILTKKALICKNDRVEELLEVKVTVLDKEVLIGVHCEKQRKSLLKILSLLNNLHLSITSTSVLPFGSSTLKITIISQMDDEYNMTLDDLVRTLRQRILSLKSHDT* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1850 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 171 IPR036638 GO:0046983
Gso18g1850 282 Coils Coil 149 176 - -
Gso18g1850 282 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Gso18g1850 282 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 277 - -
Gso18g1850 282 Gene3D - 103 173 IPR036638 GO:0046983
Gso18g1850 282 PANTHER BHLH TRANSCRIPTION FACTOR 1 277 - -
Gso18g1850 282 SMART finulus 116 165 IPR011598 GO:0046983
Gso18g1850 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1850 Gso-Chr18 51005717 51009023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1850 102 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.716 3.08e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g1850 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1850 - - gmx:100807144 507.294