Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1849 ATGCTAATAATGGAGAATTCATGGATGGACTTGCTTTCTCAATGGGAAACGGATGATGATGATTTATTCATTAATCAAAGCCACGTGATCTCTTTCAATGAAGAAAAGTCCCCCAAAGGCATGATTTTTCAGCAACAAGTTTTTTCTCCCAAAAGTAAACCCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCCTTCAAAGCAACTTGAAATCTTGCTCATCATTTTCAACGGGTGGTTATGTATTGTCTTTTGATAATAACCATATTGTTGAACCACGTTACCCTCAAAACCCCTTCTCTAAAAGCGTGGCACAAAGCCATTGCGTTGAGCCAAAGGCGTTCCCACGAACAAGGCCACGAGTTCACATATTGGCCGAGAGAAAAAGGAGAGAGGAATTGAATAAGAGCATCGTGGCACTTTCAGCCACCATTCTTGGGTTTAAAAAGACAGACAAGGCAAATGTAGTACGTGAAGCTGTCAAATATGTGAAACAACTTGAAGAACGTGTGAACGAGCTAGAAAATCAAAAGAGAAAGGAAGGTGTGAATTCAATAATACTCACCAAGAAAACGCCACTCTCCATAAATAATATTGATCAAGCCATCACTCATGGATGTGTGGATGTGGAAGAAGAAGTCCTCAAGGTGAAAGTAACTGTTTTAGATAAGGAATTGCTCATTGGAATTTATTGTGAGAAACAAAGGCAGACAATGCTCAAAATATTGTCATTGCTTGATGATCTCCATCTTTCTATAACCCCTACTAGCGTATTGCCATTTGGAACTTCCACTCTTAAAATTACCATTATCGCTCAGATGGATGACGAATATAACATGATAATTGATGATCTAGTAAAAGCACTGCGGCAACGCATATTGAAGTCACAGGATATGCAAAAGTGA 912 0.3882 MLIMENSWMDLLSQWETDDDDLFINQSHVISFNEEKSPKGMIFQQQVFSPKSKPSSSSSSSSSSSSFLQSNLKSCSSFSTGGYVLSFDNNHIVEPRYPQNPFSKSVAQSHCVEPKAFPRTRPRVHILAERKRREELNKSIVALSATILGFKKTDKANVVREAVKYVKQLEERVNELENQKRKEGVNSIILTKKTPLSINNIDQAITHGCVDVEEEVLKVKVTVLDKELLIGIYCEKQRQTMLKILSLLDDLHLSITPTSVLPFGTSTLKITIIAQMDDEYNMIIDDLVKALRQRILKSQDMQK* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1849 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 181 IPR036638 GO:0046983
Gso18g1849 303 Coils Coil 159 186 - -
Gso18g1849 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Gso18g1849 303 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
Gso18g1849 303 PANTHER BHLH TRANSCRIPTION FACTOR 2 302 - -
Gso18g1849 303 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 302 - -
Gso18g1849 303 SMART finulus 126 175 IPR011598 GO:0046983
Gso18g1849 303 Gene3D - 119 188 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1849 Gso-Chr18 50998754 51003396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1849 93 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.109 2.78e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g1849 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1849 - - gmx:100807671 511.916