Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1830 ATGCCTCCGAGAATAGTGAAGAGAGGTGCTGCGGCAAAGAGGGCATCGAGGGGATCCTCAAAGGCTGCACCTGAGAACCAGCCTGAGCCTGAAACTACGGAAGTGGTTGTGAAAAATAATCAAGAAAATCCGGTTGTTGATGCTGTGGTGGAAGAGAAGCTCGTTGATGTGGAGCAAGAACACGAGGAAGTACCAAATGAGTCGGCTAAGGTGGAAAACACTGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTTGAGGATAATTACCCTGAGTACGAAGCAGAGGAGTATGGTGGTGTTGACTATGACGAGAAGGAAATTGAACAAGAAGAAGGTCAGGAGGAGGGAGATGAAGTAGAGGAAGATCCTGAAGAGATTGTAGGTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGATGATGATGAGCATGCTGTTGAAGAGTTTGAGCATGATGAGCATGCACAGAAGCCTGATGCGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTATTTGTTGGTGGCCTAGATAAGGATGCTACTGAGCATGATCTGAAAAAGGTTTTTGGTAAAGTTGGGGTAGTTACTGAAGTCCGGCTGATGATAAATCCCCAGACTAAAAGGAACAAGGGATTTGCATTCTTGCGCTTTGAAACGGTTGAGCAAGCGAGAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAACTGAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAATAGAAGATGGCACTAATGAGGGGATGAACCGAGGATTTGCATTTTTGGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGCGACTGCAGAAGAGAGATGTTGCATTTGGAGTTGATAAGCCTGCGAAGGTTTCCTTTGCTGACTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTGTTGATTCGCTGCCTCCTTCATGGGATGAAGTTTATGTCCGAGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAAGGACATGCCAGCTGCTCGGAGGAAGAATTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATTACTAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCACGGCCTCTTTCAAAACCTCTTCAGAGAGGCCGTGGAAAACATGTTAATCATGGGGACTTTCGTTCTGGCCGCAATTCTGGAAGATTGGTAAGATCTTCACGGAGTCGACCTGCACCACGTAGTCTTCCTGCCCGTGTGGTGAGAGGAGTTGGAAGTCGTGTTCCGCCTGTTAGACCTATTAGTGTGAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGATCCAGGCCAGTGGCTCCTCCAGCTAGAAGCTATGACAGGAGATTGGCTGCTCCTGCATATCCAAAAAGTGGCATGAAAAGAGATTATAGACGACGTGTGAATCTACCACCTCCGAGAAATAGAGTTGCTGCAGATTATGGCTCTAGGTTAGCCTCTCAGAGGCACACATCTCATAGGGATTATCCTGCCCGCGGCTCTAACTACCCTGAGCTGCATAGAAGTACATCTCGTGGTTCTGCACCAAAGAGAGGTTATGTTGATGATGGCCATGGCCAAAGATTTGAGAGGGCTCCTCCTCCTCCTCCTCCTCCCCCCCATCTAAGTTACCGTGAAGGACGGCCACGCGATTATGACACTCTATCTGGCTCAAAACGTCCTTATACTGATATAGATGATGTTCCTCCTCGGTATGATACCAGTGCTCGCCAATCAAGATCTCGTTTAAATTATGACTATGGAGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGACAGACTTGGAAGATCTAGTCTTGGATATAGTGGCAGCAGAAATTCTATTTCTAGTCAAGACTTACATGGTACATATGGCAGTCGACAAGGCATGAGTTATGGCGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACTCATCAAGTTATGGTGGCGATTATGTATCCCGTGGAAGTGATGTTGGTGGCCGTTCATATTCATCTATGTATTCTGGTAGAGGGGTGGGTGATAGCAGCAATTATATGGGTGGTGGTGGATCTGGGTCATATTATTGA 2358 0.4487 MPPRIVKRGAAAKRASRGSSKAAPENQPEPETTEVVVKNNQENPVVDAVVEEKLVDVEQEHEEVPNESAKVENTEEEVKESIDEYEKDEHLDFEDNYPEYEAEEYGGVDYDEKEIEQEEGQEEGDEVEEDPEEIVGEEEGDTGDEEVEYVYEEVEDDDDDDDEHAVEEFEHDEHAQKPDAEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFGKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQARRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLIEDGTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVAFGVDKPAKVSFADSFIDLGDEIMAQVKTVFVDSLPPSWDEVYVRDLLKKYGEIEKIELAKDMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPLQRGRGKHVNHGDFRSGRNSGRLVRSSRSRPAPRSLPARVVRGVGSRVPPVRPISVRSRRPVTSMLERSRPVAPPARSYDRRLAAPAYPKSGMKRDYRRRVNLPPPRNRVAADYGSRLASQRHTSHRDYPARGSNYPELHRSTSRGSAPKRGYVDDGHGQRFERAPPPPPPPPHLSYREGRPRDYDTLSGSKRPYTDIDDVPPRYDTSARQSRSRLNYDYGGSASQYGDAYGDRLGRSSLGYSGSRNSISSQDLHGTYGSRQGMSYGGGSFGGSDGGMYSSSYGGDYVSRGSDVGGRSYSSMYSGRGVGDSSNYMGGGGSGSYY* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1830 785 MobiDBLite consensus disorder prediction 668 682 - -
Gso18g1830 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 457 IPR000504 GO:0003723
Gso18g1830 785 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 785 - -
Gso18g1830 785 CDD RRM_SF 377 432 - -
Gso18g1830 785 SUPERFAMILY RNA-binding domain, RBD 276 434 IPR035979 GO:0003676
Gso18g1830 785 MobiDBLite consensus disorder prediction 1 43 - -
Gso18g1830 785 MobiDBLite consensus disorder prediction 756 785 - -
Gso18g1830 785 PANTHER RNA RECOGNITION MOTIF 1 785 - -
Gso18g1830 785 SMART rrm1_1 279 358 IPR000504 GO:0003723
Gso18g1830 785 SMART rrm1_1 199 272 IPR000504 GO:0003723
Gso18g1830 785 SMART rrm1_1 376 451 IPR000504 GO:0003723
Gso18g1830 785 MobiDBLite consensus disorder prediction 168 190 - -
Gso18g1830 785 Gene3D - 159 278 IPR012677 -
Gso18g1830 785 Coils Coil 57 91 - -
Gso18g1830 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 276 IPR000504 GO:0003723
Gso18g1830 785 CDD RRM_SF 200 271 - -
Gso18g1830 785 SUPERFAMILY RNA-binding domain, RBD 193 276 IPR035979 GO:0003676
Gso18g1830 785 MobiDBLite consensus disorder prediction 58 190 - -
Gso18g1830 785 MobiDBLite consensus disorder prediction 20 40 - -
Gso18g1830 785 MobiDBLite consensus disorder prediction 58 77 - -
Gso18g1830 785 MobiDBLite consensus disorder prediction 520 682 - -
Gso18g1830 785 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 362 IPR000504 GO:0003723
Gso18g1830 785 MobiDBLite consensus disorder prediction 456 500 - -
Gso18g1830 785 Gene3D - 367 488 IPR012677 -
Gso18g1830 785 Coils Coil 110 130 - -
Gso18g1830 785 MobiDBLite consensus disorder prediction 95 167 - -
Gso18g1830 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 268 IPR000504 GO:0003723
Gso18g1830 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 346 IPR000504 GO:0003723
Gso18g1830 785 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 434 IPR000504 GO:0003723
Gso18g1830 785 Gene3D - 279 361 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1830 Gso-Chr18 50852722 50859003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1830 193 461 Eukaryotic Initiation Factors Gene Family AT1G49760 24.183 4.63e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1830 - - gmx:100808583 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1830 18 50852722 50859003 Gso9g2013 9 44593783 44600461 GST
Gso3g0914 3 32735682 32742358 Gso18g1830 18 50852722 50859003 PCT