Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1819 ATGATCACCACCATATATATCCTCTTATTCTTGATTCAAACATATAGTTACACTCCAATCATGGTACTCACGTTTGAAAGGAAAAAGTCCATGTTGTTTCTATTTCTTTTTTTGTTTCTGACACTCTCGTGGCCCCAAGCTGCAGCTGAAGACAGTGAAGCAAATGCTTTGTTGAAATGGAAACAAAGCTTTGACAACTACAGCCAAGGTCTCTTGTCAACTTGGAGAGGTAATAGTCCATGCAGATGGCAAGGAATTCAGTGTGACAAATCCAACTCTGTCTCCAACATTGATCTTCCATTTTATGGACTTAAAGGTACACTCCACACTCTCAACTTCTCCTCATTCCCAAACCTCCTCGGCCTGAATATCTACAACAATTCCTTTTCTGGAACCATACCCCCACAAATTGGTAACATATCCAAAGTAAATGTTTTGAATTTTTCTTTAAATTTTTTCCATGGTTCCATCCCTCAAGAAATGTGGAAACTAATGAGTTTACAGAAACTTGATATTTCCTGGTGTCAACTAAGTGGAGAGATTTCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTAGATTTAGGTAGCAACAATTTTTCAAGCCACATTCCTCCGGGGATTGGAAAGTTGCACAAGTTAGAGTTTCTAGGTATTGCAGGTAGTAAGCTTTCTGGTTCCATTCCTCAAGAAATTGGAATGTTGGCAAACCTTACGTATATTGATTTGTCTCGAAACTCTCTCTCTGGTACTATTCCTGAAACAATAGGTAACATGAGTAATTTAAATATACTTGTGCTTTCTAATAACTCCCTATCTGGGCCAATCCCACCCTCCATATGGAACATGTCTAACTTGACCTTGCTCTACCTTGATGCCAATAAACTTTCTGGATCAATCCCTGCTTCCATAGAAAACTTGGCCAATATAGAGCATCTTGCACTTGATCGCAACCACCTTTCCGGATCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCATTGAGTTGTATTTATTATTTAACAATCTTTCTGGATCAATTCCTCCCTCAATAGGAAATTTGATCAATTTGAATGTCCTTAGTCTCCAAGCAAACAATCTCTCCGGAACAATTCCTCCCACATTTGGAAATTTGAAAATGCTCACCATTTTGGAATTGTCCACCAACAAACTTAATGGTAGCATTCCACAAGGCTTGAATAACATTACCAACTGGTACTCCTTGTTACTAGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAGTTTGCTCTGCTGGGACACTAGTGTACTTTAATGCTTTTGGCAACCGTTTCACGGGTTCTGTGCCAAAAAGCTTAAAGAATTGCTCTAGTATTGAAAGAATCAGGCTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGACTTTGGAGTATATCCAAATTTGGAATACATTGATTTGAGTGACAATAAATTTCATGGTCACATCTCACCAAACTGGGGGAAGTGCCACATTCTTGAAACCTTGAAGATATCCAACAATAATATTTCTGGTGGTATACCAATAGAACTTGTTGAGGCAACCAAGCTAGGCGTGCTTCACCTTTCTTCTAACCACTTGAATGGAAAGCTTCCAAATGAATTAGGGAATATGAAATCGTTATTTCAACTCAAGATTAGCAATAACCAACTTTCTGGAAACATTCCAACAGAAATTGGATTACTGCAAAATCTTGAAGATTTGGATCTGGGAAATAACGAGTTGAGTGGCACAATACCAAAAGAAGTTGGGGAATTACACAAGTTACGGAATTTGAATTTGAGCAAGAACAAAATTGAAGGAAGCATTCCCTCTAAGTTTAGCCAATCTTTAGAATCTCTTGATCTTAGTGGCAATTTGTTGAGTGGAACAATACCAACAAATCTTGGAGGTTTGCAAAGCTTGTTCATGTTGAATCTCTCACATAATAGTCTTTCTGGTACCATTCCTTCCACTTTTAGCAGAATGTTGAGTATTGTCAATATATCAGACAACCAATTAGAAGGGCCACTTCCAAATATTCCTGCTTTTCTTGATGCTTCAATTGAATCATTGAAAAATAACAAAGGCTTATGTGGTAATGTCACGGGTTTGGTTCTTTGTCCAACCAGCCATAATCGAAAGAGCAACAAAGTCATCCTAGTGGTATTCCTTAGTTTAGGAGCTCTACTGCTAGTGTTGTGTGGGGTTGGACTTTCAATGTATATTTTGTGTCGCAGTAAAAGAAAGGGAAAAAGTCATTCTAATTCTGAAGAAGCACAAAAGGATGTACTCTTTTCCATATGGAGCTATGATGGGAAAATCATGTTTGAAAACATCATTAAAGCTACAGAGAGTTTTGATGACAAATATCTCATTGGAGCGGGAAGTCAAGGATATGTTTACAAGGTGGTGTTGCCTTCAGGTTTGGTTGTTGCCGTGAAGAAACTTCATTCGGTGATAGACGAGGAAATGTCAGATTTTAGTTCAAAGGCTTTTGCAAGTGAGATTCAAGCCTTGACAGAAATCAAACACCGCAACATCATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTTTTGGTTTATGAGTTCATGCAAGGGGGAAGCTTGGATCAAATGCTGAAGAATGACACACAAGCAATTGCATTTGATTGGGAAAAGAGAGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCTTACTTGCATCATGATTGCTCATCTCCTATTGTTCATCGTGACATATCAAGTAAGAATGTTCTTCTGGATCTTGAATATGAAGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCTAGTTCAGATAGTTGGACTCAATTTGCAGGCACCTTTGGGTATGCTGCTCCAGAGTTGGCCCAGACAATGGAAGTGAACGAGAAATGTGATGTTTTTAGTTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAACATCCAAGAGATATCATTTCTCAACTTATGTCACCATCTATGGCACCAACTACTAATGATTTGCTGTTATCTGAGGTTTTAGATCAACGGCCACCTCAACCTACGAAAGTAATTGATGGGGAGGTGATCTTAATTGTAAGGTTAGCACTTGCTTGCTTGAGTGAAAATCCACGTTCTCGCCCAACCATGGATCAAGTATCTAAGGCTTTTGGAACAGGGAAATCACCTTTGGATGACCAATTTCCTATGATCAGACTAGGACAACTCCGTTGA 3249 0.3881 MITTIYILLFLIQTYSYTPIMVLTFERKKSMLFLFLFLFLTLSWPQAAAEDSEANALLKWKQSFDNYSQGLLSTWRGNSPCRWQGIQCDKSNSVSNIDLPFYGLKGTLHTLNFSSFPNLLGLNIYNNSFSGTIPPQIGNISKVNVLNFSLNFFHGSIPQEMWKLMSLQKLDISWCQLSGEISNSIANLSNLSYLDLGSNNFSSHIPPGIGKLHKLEFLGIAGSKLSGSIPQEIGMLANLTYIDLSRNSLSGTIPETIGNMSNLNILVLSNNSLSGPIPPSIWNMSNLTLLYLDANKLSGSIPASIENLANIEHLALDRNHLSGSIPSTIGNLTKLIELYLLFNNLSGSIPPSIGNLINLNVLSLQANNLSGTIPPTFGNLKMLTILELSTNKLNGSIPQGLNNITNWYSLLLAENDFTGHLPPQVCSAGTLVYFNAFGNRFTGSVPKSLKNCSSIERIRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFHGHISPNWGKCHILETLKISNNNISGGIPIELVEATKLGVLHLSSNHLNGKLPNELGNMKSLFQLKISNNQLSGNIPTEIGLLQNLEDLDLGNNELSGTIPKEVGELHKLRNLNLSKNKIEGSIPSKFSQSLESLDLSGNLLSGTIPTNLGGLQSLFMLNLSHNSLSGTIPSTFSRMLSIVNISDNQLEGPLPNIPAFLDASIESLKNNKGLCGNVTGLVLCPTSHNRKSNKVILVVFLSLGALLLVLCGVGLSMYILCRSKRKGKSHSNSEEAQKDVLFSIWSYDGKIMFENIIKATESFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSVIDEEMSDFSSKAFASEIQALTEIKHRNIIKLHGFCSHSQVSFLVYEFMQGGSLDQMLKNDTQAIAFDWEKRVNVVKGVANALSYLHHDCSSPIVHRDISSKNVLLDLEYEAHVSDFGTAKFLKPSSDSWTQFAGTFGYAAPELAQTMEVNEKCDVFSFGVLALEIIMGKHPRDIISQLMSPSMAPTTNDLLLSEVLDQRPPQPTKVIDGEVILIVRLALACLSENPRSRPTMDQVSKAFGTGKSPLDDQFPMIRLGQLR* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1819 1082 Gene3D Phosphorylase Kinase; domain 1 749 870 - -
Gso18g1819 1082 SUPERFAMILY Protein kinase-like (PK-like) 774 1060 IPR011009 -
Gso18g1819 1082 Pfam Protein kinase domain 792 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1819 1082 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Gso18g1819 1082 Pfam Leucine rich repeat 620 677 IPR001611 GO:0005515
Gso18g1819 1082 ProSiteProfiles Leucine-rich repeat profile. 598 620 IPR001611 GO:0005515
Gso18g1819 1082 Gene3D Ribonuclease Inhibitor 206 302 IPR032675 -
Gso18g1819 1082 Gene3D Ribonuclease Inhibitor 49 205 IPR032675 -
Gso18g1819 1082 SUPERFAMILY RNI-like 362 679 - -
Gso18g1819 1082 SMART LRR_typ_2 236 260 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 380 404 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 356 379 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 308 332 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 572 596 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 188 212 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 642 665 IPR003591 -
Gso18g1819 1082 SMART LRR_typ_2 284 307 IPR003591 -
Gso18g1819 1082 Gene3D Transferase(Phosphotransferase) domain 1 871 1070 - -
Gso18g1819 1082 SUPERFAMILY L domain-like 81 418 - -
Gso18g1819 1082 Gene3D Ribonuclease Inhibitor 405 712 IPR032675 -
Gso18g1819 1082 ProSiteProfiles Protein kinase domain profile. 790 1076 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1819 1082 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515
Gso18g1819 1082 SMART LRR_sd22_2 284 310 - -
Gso18g1819 1082 SMART LRR_sd22_2 236 262 - -
Gso18g1819 1082 SMART LRR_sd22_2 332 358 - -
Gso18g1819 1082 SMART LRR_sd22_2 380 403 - -
Gso18g1819 1082 SMART LRR_sd22_2 618 644 - -
Gso18g1819 1082 SMART LRR_sd22_2 572 604 - -
Gso18g1819 1082 Pfam Leucine rich repeat N-terminal domain 51 89 IPR013210 -
Gso18g1819 1082 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 190 268 - -
Gso18g1819 1082 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 34 194 - -
Gso18g1819 1082 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 264 1081 - -
Gso18g1819 1082 Gene3D Ribonuclease Inhibitor 303 404 IPR032675 -
Gso18g1819 1082 PRINTS Leucine-rich repeat signature 239 252 - -
Gso18g1819 1082 PRINTS Leucine-rich repeat signature 572 585 - -
Gso18g1819 1082 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 264 1081 - -
Gso18g1819 1082 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 190 268 - -
Gso18g1819 1082 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 34 194 - -
Gso18g1819 1082 ProSitePatterns Tyrosine protein kinases specific active-site signature. 916 928 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1819 Gso-Chr18 50755648 50759309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1819 12 964 Receptor kinase-like Gene Family AT4G08850 43.048 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1819 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1819 - - gmx:100812486 1484.93