Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1817 ATGGTACTATCCATTGAGTTTCTTGGCCGCTACTGGATTCTTTTGGTGGTGTTTCTAACACACTCTTCACCCCAACTTGCTGCAGCCGAGAACAATGAAGCAAACGCACTTTTGAGGTGGAAAGACAACTTTGACAAGCCCAGCCAAAATCTCTTGTCAACATGGACAGGCTCTGATCCATGTAAATGGCAAGGAATTCAGTGTGATAATTCCAACTCCGTCTCCACCATAAATCTTCCAAATTATGGGTTGTCAGGTACACTCCACACTCTCAACTTCTCCTCATTCCCCAACCTCCTCAGCCTAAATATCTACAACAACTCCTTTTATGGTACCATACCCCCACAAATTGGTAACATGTCCAAACTAAATGTTTTGAATTTTTCTTTAAATCTTTTCCGTGGCTCCATCCCTCAAGAAATGTGGACACTAAGGAGTTTACGCGGCCTTGATCTTTCCCAATGTAGTGAACTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTTGATTTAAGTGTCTGCAATTTTTCTGGCCATATTCCTCCAGAGATTGGAAAGTTGAACAAGTTGGAGAATCTACGTATTTCACGGAATAAGCTTTTCGGTTCCATTCCTCCAGAAATTGGAATGTTGACAAATCTTAAGGATATTGATTTGGCAAGGAACGTTCTCTCTGGTACTCTCCCTGAAACAATAGGTAACATGAGTAATTTGAATCTGCTTCGTCTTTCCAATAACTCTTATTTATCTGGGCCAATTCCATCCTCCATATGGAACATGACTAACTTGACATTGCTCTACCTTGATAAAAACAACCTTTCTGGATCAATCCCTGCTTCCATAGAAAATTTGGCCAATTTAGAGCAACTTACAGTTGCTAACAACCACCTTTCTGGATCCATTCCTTCCACCATTGGAAATTTGACAAAGCTCATCAAGTTGTATTTAGGCATGAACAATCTTTCTGGATCAATTCCTCCCTCCATAGGAAATTTGATCCATCTGGATGCCCTTAGTCTCCAAGTAAACAATCTCTCCGGAACAATTCCTGCCACATTTGGAAATTTGAAAATGCTCATCGTTTTGGAATTGTCCACCAACAAACTTAATGGCAGCATTCCACAAGGCTTAACTAACATTACCAACTGGTACTCCTTGTTACTACATGAGAATGACTTCACAGGCCATTTACCACCTCAAGTTTGCTCTGCTGGGGCACTAGTGTACTTTAGTGCTTTTGGCAACCGTTTCACGGGTTCCGTGCCAAAAAGCTTAAAGAATTGCTCTAGTATTCAAAGAATAAGGCTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCGCCAAACTGGGGTAAGTGCCCTAAGCTTGAGACCTTGAAGATATCTGGTAATAATATTTCTGGTGGTATACCAATAGAACTTGTTGAGGCAACCAACCTAGGCAAGCTTCACCTTTCTTCTAACCACTTGAATGGGAAGCTTCCAAAGGAATTAGGCAATATGAAATCCTTAATTGAACTCCAGCTTAGCAACAACCATCTTTCTGGAACCATTCCAAAGAAAATTGGATCACTGCAAAAGCTTGAAGATTTGGATCTTGGAGATAACCAGTTGAGTGGAACAATTCCAATAGAAGTCGTGGAATTACCCAAGTTACGGAATTTGAATTTGAGCAATAATAAAATAAATGGAAGTGTTCCCTTTGAGTTTCGCCAACCTCTTGAATCTCTTGATCTAAGTGGGAATTTGTTGAGTGGAACAATACCAAGACAGCTTGGAGAGGTGATGGGACTGAAATTGTTGAATCTGTCTCGCAATAATCTTTCTGGAGGTATTCCATCAAGTTTTGATGACATGTCTTGTTTGATTTCTGTCAACATATCATACAACCAGTTGGAAGGGCCACTTCCAAATAATAAAGCCTTTCTTAAGGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGCAACGTCACTGGCTTGATGCTTTGCCCAACCATCAACAGCAACAAAAAAAGGCACAAGGGCATTCTACTGGCATTATGTATTATCTTGGGTGCTCTTGTTCTGGTATTATGTGGAGTGGGAGTTTCAATGTATATTCTTTTTTGGAAAGAAAGCAAGAAAGAAACCCATGCTAAAGAAAAACATCAATCAGAAAAAGCTCTGTCTGAAGAAGTGTTTTCCATATGGAGTCATGATGGCAAAATTATGTTTGAAAACATCATTGAAGCTACTGATAGCTTCAATGACAAGTATCTTATTGGAGTTGGAGGGCAAGGAAATGTTTACAAGGCTGAGTTGTCTTCAGATCAGGTTTATGCGGTGAAGAAACTTCATGTGGAAACCGATGGAGAGAGGCATAATTTTAAAGCATTTGAAAATGAAATTCAAGCCTTGACCGAAATCAGGCACCGTAACATTATAAAGCTATATGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTCTACAAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTACTAAGCAATGACACAAAAGCAGTTGCATTTGACTGGGAAAAGAGGGTGAATACTGTTAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGATTGCTCACCTCCAATAATTCATCGTGATATTTCTAGCAAGAATGTTCTTTTGGATTCACAATATGAAGCCCTTGTCTCTGATTTTGGGACAGCTAAGATTCTCAAGCCTGATTCTCACACTTGGACCACGTTTGCTGGCACGTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACTATGGAAGTAACTGAGAAATGTGATGTATTTAGTTTTGGAGTGCTTTCTCTTGAAATCATCACGGGGAAGCATCCAGGAGATCTCATTTCTTCATTGTTTTCTTCGTCTTCATCAGCAACAATGACTTTTAATTTGCTACTAATTGATGTGTTAGACCAAAGACTACCTCAACCTCTAAAATCAGTTGTGGGGGATGTCATTTTGGTTGCAAGCTTGGCATTTTCTTGCATAAGTGAAAATCCAAGTTCTCGCCCAACCATGGATCAGGTGTCTAAAAAGCTGATGGGGAAATCACCTTTAGCAGAACAGTTCCCTGCGATTAGACTTGGACAACTCTTCTAG 3213 0.4002 MVLSIEFLGRYWILLVVFLTHSSPQLAAAENNEANALLRWKDNFDKPSQNLLSTWTGSDPCKWQGIQCDNSNSVSTINLPNYGLSGTLHTLNFSSFPNLLSLNIYNNSFYGTIPPQIGNMSKLNVLNFSLNLFRGSIPQEMWTLRSLRGLDLSQCSELSGEIPNSIANLSNLSYLDLSVCNFSGHIPPEIGKLNKLENLRISRNKLFGSIPPEIGMLTNLKDIDLARNVLSGTLPETIGNMSNLNLLRLSNNSYLSGPIPSSIWNMTNLTLLYLDKNNLSGSIPASIENLANLEQLTVANNHLSGSIPSTIGNLTKLIKLYLGMNNLSGSIPPSIGNLIHLDALSLQVNNLSGTIPATFGNLKMLIVLELSTNKLNGSIPQGLTNITNWYSLLLHENDFTGHLPPQVCSAGALVYFSAFGNRFTGSVPKSLKNCSSIQRIRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPKLETLKISGNNISGGIPIELVEATNLGKLHLSSNHLNGKLPKELGNMKSLIELQLSNNHLSGTIPKKIGSLQKLEDLDLGDNQLSGTIPIEVVELPKLRNLNLSNNKINGSVPFEFRQPLESLDLSGNLLSGTIPRQLGEVMGLKLLNLSRNNLSGGIPSSFDDMSCLISVNISYNQLEGPLPNNKAFLKAPIESLKNNKGLCGNVTGLMLCPTINSNKKRHKGILLALCIILGALVLVLCGVGVSMYILFWKESKKETHAKEKHQSEKALSEEVFSIWSHDGKIMFENIIEATDSFNDKYLIGVGGQGNVYKAELSSDQVYAVKKLHVETDGERHNFKAFENEIQALTEIRHRNIIKLYGFCSHSRFSFLVYKFLEGGSLDQVLSNDTKAVAFDWEKRVNTVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEALVSDFGTAKILKPDSHTWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLSLEIITGKHPGDLISSLFSSSSSATMTFNLLLIDVLDQRLPQPLKSVVGDVILVASLAFSCISENPSSRPTMDQVSKKLMGKSPLAEQFPAIRLGQLF* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1817 1070 SUPERFAMILY RNI-like 77 385 - -
Gso18g1817 1070 SMART LRR_sd22_2 554 575 - -
Gso18g1817 1070 SMART LRR_sd22_2 314 340 - -
Gso18g1817 1070 SMART LRR_sd22_2 217 243 - -
Gso18g1817 1070 SMART LRR_sd22_2 266 292 - -
Gso18g1817 1070 SMART LRR_sd22_2 578 608 - -
Gso18g1817 1070 Gene3D Ribonuclease Inhibitor 319 388 IPR032675 -
Gso18g1817 1070 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 169 249 - -
Gso18g1817 1070 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 175 - -
Gso18g1817 1070 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 245 1069 - -
Gso18g1817 1070 ProSitePatterns Tyrosine protein kinases specific active-site signature. 904 916 IPR008266 GO:0004672|GO:0006468
Gso18g1817 1070 Gene3D Ribonuclease Inhibitor 29 186 IPR032675 -
Gso18g1817 1070 Pfam Protein kinase domain 781 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1817 1070 Gene3D Transferase(Phosphotransferase) domain 1 859 1060 - -
Gso18g1817 1070 SMART LRR_typ_2 266 289 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 290 313 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 314 338 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 362 386 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 578 601 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 217 241 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 530 554 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 169 193 IPR003591 -
Gso18g1817 1070 SMART LRR_typ_2 96 120 IPR003591 -
Gso18g1817 1070 SUPERFAMILY Protein kinase-like (PK-like) 766 1051 IPR011009 -
Gso18g1817 1070 SUPERFAMILY RNI-like 332 665 - -
Gso18g1817 1070 Pfam Leucine rich repeat 459 519 IPR001611 GO:0005515
Gso18g1817 1070 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Gso18g1817 1070 Pfam Leucine rich repeat 603 661 IPR001611 GO:0005515
Gso18g1817 1070 Gene3D Ribonuclease Inhibitor 187 318 IPR032675 -
Gso18g1817 1070 ProSiteProfiles Protein kinase domain profile. 780 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1817 1070 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Gso18g1817 1070 PANTHER LRR RECEPTOR-LIKE KINASE 9 175 - -
Gso18g1817 1070 PANTHER LRR RECEPTOR-LIKE KINASE 245 1069 - -
Gso18g1817 1070 PANTHER LRR RECEPTOR-LIKE KINASE 169 249 - -
Gso18g1817 1070 Gene3D Phosphorylase Kinase; domain 1 738 858 - -
Gso18g1817 1070 Gene3D Ribonuclease Inhibitor 390 704 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1817 Gso-Chr18 50733203 50736903 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1817 13 952 Receptor kinase-like Gene Family AT4G08850 44.770 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1817 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1817 - - gmx:100812486 2050.4