Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1814 ATGGTACTATCCATCAAGATTCTTGCTCGCTGCTGGATTCTTTTGGTGGTGTTTCTAACACAGTCTTCACCCCAACTTGCTGCAGCCGAGAACAATGAAGCAAACGCACTTTTGAGGTGGAAAGACAACTTTGACAAGCCCGGCCAAAATCTCTTGTCAACATGGACAGGCTCTGATCCATGTAAATGGCAAGGAATTCAGTGTGATAATTCCAACTCCGTCTCCACCATAAATCTTCCAAATTATGGGTTGTCAGGTACACTCCACACTCTCAACTTCTCCTCATTCCCCAACCTCCTCAGCCTAAATATCTACAACAACTCCTTTTATGGTACCATACCCCCACAAATTGGTAACATGTCCAAACTAAATGTTTTGAATTTTTCTTTAAATCTTTTCCGTGGTTCCATCCCTCAAGAAATGTGGACACTAAGGAGTTTACGCGGCCTTGATCTTTTCCAATGTAGTCAACTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCCTACCTGTCATATCTTGATTTAAGTATCTGCAATTTTTCTGGCCATATTCCTCCAGAGATTGGAAAGTTGAACAAGTTGGAGATTCTACATATTTCACGGAGTAAGCTTTTCGGTTCCATTCCTCCAGAAATTGGAATGTTGACAAATCTTAAGGATATTGATTTGTCAAGGAACTTTCTCTCTGGTACTCTCCCTGAAACAATAGGTAACATGAGTACTTTGAATATGCTTCGTCTTTCCAATAACTCCTTTTTATCTGGGCCAATTCCATCCTCCATATGGAACATGACTAACTTGACATTGCTCTACCTTGATAACAACAACCTTTCTGGATCAATCCCTGCTTCCATAAAAAAATTGGCCAATTTACAGCAACTTGCACTTGATTACAACCACCTTTCGGGATCAATTCCTTCCACCATTGGAAATTTGACAAAGCTCATCGAGTTGTATTTACGCTTTAACAATCTTTCTGGATCAATTCCTCCCTCCATAGGAAATTTGATCCATTTGGATGTCCTTAGTCTCCAAGGAAACAATCTCTCCGGAACAATTCCTGCCACAATTGGAAATTTAAAAAGGCTCACCATTTTAGAATTGTCCGCAAACAAACTTAATGGCAGCATACCACAAGTCTTGAATAACATTCGCAACTGGTCTTACTTGTTACTAGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGACACTCTATATCTTTAATGCTTTTCGCAATCGTTTCACGGGTCCAGTGCCAAGAAGCTTAAAGAACTGCCCTAGTATTGCCAGAATCAGGATCCAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCGCCAAACTGGGGTAAGTGCCCTAAGCTTGAGACCTTGAAGATATCTGGTAATAATATTTCTGGTGGTATACCAATAGAACTTGTTGAGGCAACCAACCTAGGCGTGCTTCACCTTTCTTCTAACCACTTGAATGGGAAGCTTCCAAAGGAATTAGGCAATATGAAATCCTTAATTGAACTCCAGCTTAGCAACAACCATCTTTCTGGAACCATTCCAAAGAAAATTGGATCACTGCAAAAGCTTGAAGATTTGGATCTTGGAGATAACCAGTTGAGTGGAACAATTCCAATAGAAGTCGTGGAATTACCCAAGTTACGGAATTTGAATTTGAGCAATAATAAAATAAATGGAAGTGTTCCCTTTGAGTTTCGCCAATTTCAGCCTCTTGAATCTCTTGATCTAAGTGGGAATTTGTTGAGTGGAACAATACCAAGACAGCTTGGAGAGGTGATGCGACTGGAATTGTTGAATCTGTCTCGCAATAATCTTTCTGGAGGTATTCCATCAAGTTTTGATGGCATGTCAAGTTTGATTTCTGTCAACATATCATACAACCAGTTGGAAGGGCCACTTCCAAATAATGAAGCCTTTCTTAAGGCTCCAATTGAATCATTGAAAAATAACAAAGCCTTGTGTGGCAACGTCACTGGCTTGATGCTTTGCCCAACCATCAACAGCAATCAAAAAAGGCACAAGGGCATTCTACTGGCGTTATTTATTATCTTGGGTGCTCTTGTTCTGGTATTATGTGGAGTGGGAGTTTCAATGTATATTCTTTTTTGGAAAGCTAGCAAGAAAGAAACCCATGCTAAAGAAAAACATCAATCAGAAAAAGCTCTGTCTGAAGAAGTGTTTTCCATATGGAGTCATGATGGCAAAATTATGTTTGAAAACATCATTGAAGCTACTGATAGCTTCAATGACAAGTATCTTATTGGAGTTGGAGGGCAAGGAAATGTTTACAAGGCTGAGTTGTCTTCAGATCAGGTTTATGCGGTGAAGAAACTTCATGTGGAAACCGATGGAGAGAGGCATAATTTTAAAGCATTTGAAAATGAAATTCAAGCCTTGACCGAAATCAGGCACCGTAACATTATAAAGCTATATGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTCTACAAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTACTAAGCAATGACACAAAAGCAGTTGCATTTGACTGGGAAAAGAGGGTGAATACTGTTAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGATTGCTCACCTCCAATAATTCATCGTGATATTTCTAGCAAGAATGTTCTTTTGGATTCACAATATGAAGCCCATGTCTCTGATTTTGGGACAGCTAAAATTCTAAAGCCCGGTTCACACAATTGGACCACGTTTGCTGGCACGTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACTATGGAAGTGACTGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTTTCTCTTGAAATCGTCACGGGGAAGCATCCAGGAGATCTCATTTCTTCATTGTTTTCTTCGTCTTCGTCAGCAACAATGACTTTTAATTTGCTACTAATTGATGTGTTAGACCAAAGACTACCTCAACCTCTAAAATCAGTTGTCGGGGATGTCATTTTGGTTGCAAGCTTGGCATTTTCTTGCATAAGTGAAAATCCAAGTTCTCGCCCAACCATGGATCAGGTGTCTAAAAAGCTGATGGGGAAATCACCTTTAGCAGAACAGTTCCCTGCGATTAGACTTGGACAACTCTTCTAG 3219 0.4007 MVLSIKILARCWILLVVFLTQSSPQLAAAENNEANALLRWKDNFDKPGQNLLSTWTGSDPCKWQGIQCDNSNSVSTINLPNYGLSGTLHTLNFSSFPNLLSLNIYNNSFYGTIPPQIGNMSKLNVLNFSLNLFRGSIPQEMWTLRSLRGLDLFQCSQLSGEIPNSIANLSYLSYLDLSICNFSGHIPPEIGKLNKLEILHISRSKLFGSIPPEIGMLTNLKDIDLSRNFLSGTLPETIGNMSTLNMLRLSNNSFLSGPIPSSIWNMTNLTLLYLDNNNLSGSIPASIKKLANLQQLALDYNHLSGSIPSTIGNLTKLIELYLRFNNLSGSIPPSIGNLIHLDVLSLQGNNLSGTIPATIGNLKRLTILELSANKLNGSIPQVLNNIRNWSYLLLAENDFTGHLPPQICSAGTLYIFNAFRNRFTGPVPRSLKNCPSIARIRIQGNQLEGDIAQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPKLETLKISGNNISGGIPIELVEATNLGVLHLSSNHLNGKLPKELGNMKSLIELQLSNNHLSGTIPKKIGSLQKLEDLDLGDNQLSGTIPIEVVELPKLRNLNLSNNKINGSVPFEFRQFQPLESLDLSGNLLSGTIPRQLGEVMRLELLNLSRNNLSGGIPSSFDGMSSLISVNISYNQLEGPLPNNEAFLKAPIESLKNNKALCGNVTGLMLCPTINSNQKRHKGILLALFIILGALVLVLCGVGVSMYILFWKASKKETHAKEKHQSEKALSEEVFSIWSHDGKIMFENIIEATDSFNDKYLIGVGGQGNVYKAELSSDQVYAVKKLHVETDGERHNFKAFENEIQALTEIRHRNIIKLYGFCSHSRFSFLVYKFLEGGSLDQVLSNDTKAVAFDWEKRVNTVKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEAHVSDFGTAKILKPGSHNWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLSLEIVTGKHPGDLISSLFSSSSSATMTFNLLLIDVLDQRLPQPLKSVVGDVILVASLAFSCISENPSSRPTMDQVSKKLMGKSPLAEQFPAIRLGQLF* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1814 1072 ProSitePatterns Tyrosine protein kinases specific active-site signature. 906 918 IPR008266 GO:0004672|GO:0006468
Gso18g1814 1072 Gene3D Ribonuclease Inhibitor 386 697 IPR032675 -
Gso18g1814 1072 ProSiteProfiles Protein kinase domain profile. 782 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1814 1072 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Gso18g1814 1072 Gene3D Transferase(Phosphotransferase) domain 1 861 1062 - -
Gso18g1814 1072 SUPERFAMILY RNI-like 77 385 - -
Gso18g1814 1072 SMART LRR_typ_2 578 601 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 266 289 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 602 626 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 314 338 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 362 385 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 530 554 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 290 313 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 96 120 IPR003591 -
Gso18g1814 1072 SMART LRR_typ_2 217 241 IPR003591 -
Gso18g1814 1072 SMART LRR_sd22_2 314 340 - -
Gso18g1814 1072 SMART LRR_sd22_2 217 243 - -
Gso18g1814 1072 SMART LRR_sd22_2 362 388 - -
Gso18g1814 1072 SMART LRR_sd22_2 554 575 - -
Gso18g1814 1072 SMART LRR_sd22_2 578 607 - -
Gso18g1814 1072 SMART LRR_sd22_2 266 295 - -
Gso18g1814 1072 PANTHER LRR RECEPTOR-LIKE KINASE 172 249 - -
Gso18g1814 1072 PANTHER LRR RECEPTOR-LIKE KINASE 245 1071 - -
Gso18g1814 1072 PANTHER LRR RECEPTOR-LIKE KINASE 9 174 - -
Gso18g1814 1072 Pfam Leucine rich repeat 459 519 IPR001611 GO:0005515
Gso18g1814 1072 Pfam Leucine rich repeat 532 591 IPR001611 GO:0005515
Gso18g1814 1072 Pfam Leucine rich repeat 267 327 IPR001611 GO:0005515
Gso18g1814 1072 Pfam Leucine rich repeat 195 253 IPR001611 GO:0005515
Gso18g1814 1072 Pfam Leucine rich repeat 605 663 IPR001611 GO:0005515
Gso18g1814 1072 Gene3D Ribonuclease Inhibitor 185 282 IPR032675 -
Gso18g1814 1072 SUPERFAMILY RNI-like 344 665 - -
Gso18g1814 1072 SUPERFAMILY Protein kinase-like (PK-like) 768 1053 IPR011009 -
Gso18g1814 1072 Gene3D Phosphorylase Kinase; domain 1 739 860 - -
Gso18g1814 1072 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 172 249 - -
Gso18g1814 1072 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 245 1071 - -
Gso18g1814 1072 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 174 - -
Gso18g1814 1072 Pfam Protein kinase domain 783 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1814 1072 Gene3D Ribonuclease Inhibitor 283 385 IPR032675 -
Gso18g1814 1072 Gene3D Ribonuclease Inhibitor 29 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1814 Gso-Chr18 50696575 50700425 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1814 13 954 Receptor kinase-like Gene Family AT4G08850 42.755 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1814 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1814 - - gmx:100814634 1981.07