Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1812 ATGGTATCCATCAAGATTCTAGCCTGCTGGCAGATTCTTTTGGTCTTTCTAATACACCCTTCACCCCAAGTTGCTTGTTTTTCCAAAATGGTTTCTTTGGCCTCTGCTGCCACCACAGTTACTGCAGCTTCGGACAGTGAAGCAAATGCATTGTTAAAGTGGAAATACAGCCTTGACAAGCCAAGCCAAGATCTCTTGTCAACATGGAAAGGTTCTAGTCCATGCAAAAAATGGCAAGGAATTCAGTGCGATAAATCCAACTCTGTCTCCAGAATAACTCTTGCAGATTATGAACTGAAAGGTACACTTCAAACCTTCAACTTCTCCGCTTTCCCTAACCTCCTCAGCCTAAATATATTCAACAACTCCTTTTATGGGACCATTCCACCACAAATTGGTAACATGTCCAAAGTAAATATTTTGAATCTTTCTACAAATCATTTCCGTGGTTCTATCCCTCAAGAAATGGGGAGACTAAGGAGTTTACATAAGCTTGATCTTTCCATATGTCTATTAAGTGGAGCTATTCCTAATACCATAACAAACTTGTCCAACTTGGAATATCTAGATTTCGGTAGCAACAATTTTTCTAGCCACATTCCTCCAGAGATTGGAAAGTTGAACAAGTTGGAGTATCTAGGCTTTGGGGATAGTCACCTTATCGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAATCTTCAATTTATTGATTTGTCAAGAAACTCTATCTCTGGTACTATACCTGAAACAATAGGTAACATGAGTAACTTAAATATACTTTACCTTTGCAATAACTCCCTTCTATCTGGGCCAATCCCATCCTCCTTATGGAACATGTCTAACTTGACCGACCTCTACCTTTTTAACAATACACTTTCTGGATCAATCCCTCCTTCCGTAGAAAACTTGATCAATTTAGAGTATCTTCAACTTGATGGCAACCACCTTTCTGGATCCATTCCTTCCACCATTGGAAACTTGACAAATCTCATCGAGTTGTATTTAGGACTCAACAATCTTTCTGGATCAATTCCTCCCTCTATAGGGAACTTGATCAATTTGGATGTCCTTAGTCTCCAAGGAAACAATCTTTCAGGAACTATTCCTGCCACAATTGGAAATATGAAAATGCTCACCGTTTTAGAATTGACCACCAACAAACTTCATGGCAGCATTCCACAAGGCTTGAATAACATTACCAACTGGTTTTCCTTCTTAATAGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGTATCTAATCTATTTAAATGCTGATCACAACCATTTCACGGGTCCAGTGCCAAGAAGCCTAAAGAATTGCCCGAGTATTCTTAAAATCAGGCTGGATGGCAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGATTACATTGATTTGAGCGACAACAAGCTATACGGCCAAATTTCACCAAACTGGGGGAAGTGCCACAATCTTAATACATTGAAGATATCCAACAATAATATTTCTGGTGGTATACCAATAGAACTTGTTGAGGCAACCAAGCTAGGTGTCCTTCACCTTTCTTCTAACCACTTGAATGGAAAACTTCCAAAGGAATTAGGGAATATGAAATCATTAATTCAACTCAAGATTAGCAACAACAATATTTCTGGAAACATTCCTACAGAAATTGGATCACTGCAAAATCTTGAAGAATTGGATCTTGGAGATAATCAGCTGAGTGGCACAATACCGATAGAAGTTGTGAAATTACCCAAGTTATGGTATTTGAATTTGAGCAATAATAGAATAAATGGAAGCATTCCCTTTGAGTTTCACCAATTTCAGCCTCTTGAATCTCTTGATCTTAGCGGGAATTTGTTGAGTGGAACAATACCAAGACCACTTGGAGACTTGAAGAAACTGCGCTTGTTGAATCTCTCTCGCAATAATCTTTCTGGAAGTATTCCCTCCAGTTTTGATGGCATGTCAGGTTTAACTTCGGTGAACATATCATACAACCAGTTAGAAGGGCCACTTCCTAAAAATCAAGCCTTTCTTAAGGCTCCAATTGAGTCGTTGAAAAATAACAAGGACTTGTGTGGCAACGTCACTGGCTTGATGCTTTGCCCAACCAACCGCAATCAAAAGAGGCACAAGGGCATTCTATTGGTTTTATTTATTATCCTGGGTGCTCTTACACTAGTATTGTGTGGGGTGGGAGTTTCAATGTACATTCTTTGTTTGAAAGGTAGCAAGAAAGCAACCCGTGCTAAAGAATCAGAAAAGGCACTGTCTGAAGAAGTGTTTTCCATATGGAGTCATGATGGAAAAGTTATGTTTGAAAATATCATTGAAGCTACCGATAACTTCAATGACAAATACCTCATTGGAGTTGGAGGGCAAGGGAGTGTTTACAAGGCTGAGTTGTCTTCAGATCAGGTTTATGCGGTGAAGAAGCTTCATGTGGAAGCAGATGGAGAGCAGCACAATCTTAAAGCTTTTGAAAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAACATTATAAAGCTCTGTGGATATTGCAAACATACACGGTTCTCATTTTTGGTTTATAAGTTCTTAGAAGGGGGTAGCTTGGATCAAATACTAAGCAATGACACAAAAGCAGCTGCATTTGACTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCCTATATGCATCATGATTGCTCACCTCCAATTATTCATCGAGACATATCAAGCAAGAATATTCTTTTGGATTCACAATATGAAGCCCATGTCTCTGATTTTGGGACAGCTAAGATTCTCAAGCCTGATTCACACACTTGGACCACGTTTGCAGTCACCTATGGGTACGCAGCTCCAGAGCTTGCCCAGACTACGGAAGTGACAGAGAAATGTGATGTATTCAGTTTTGGAGTTCTTTGTCTAGAAATCATCATGGGGAAGCATCCAGGAGATCTCATGTCTTCATTGTTATCTTCATCTTCAGCAACAATAACTTATAATTTGTTACTAATTGATGTGCTAGACCAAAGGCCTCCTCAACCTCTAAACTCAATTGTTGGGGATGTCATTTTGGTTGCAAGCTTGGCATTTTCTTGCATAAGTGAAAATCCAAGTTCTCGCCCAACCATGGATCAAGTGTCTAAAAAGCTTATGATGGGGAAACCACCTTTAGCAGACCAGTTCCCTATGATTAGACTTGGACAACTCCTCTAA 3249 0.3955 MVSIKILACWQILLVFLIHPSPQVACFSKMVSLASAATTVTAASDSEANALLKWKYSLDKPSQDLLSTWKGSSPCKKWQGIQCDKSNSVSRITLADYELKGTLQTFNFSAFPNLLSLNIFNNSFYGTIPPQIGNMSKVNILNLSTNHFRGSIPQEMGRLRSLHKLDLSICLLSGAIPNTITNLSNLEYLDFGSNNFSSHIPPEIGKLNKLEYLGFGDSHLIGSIPQEIGMLTNLQFIDLSRNSISGTIPETIGNMSNLNILYLCNNSLLSGPIPSSLWNMSNLTDLYLFNNTLSGSIPPSVENLINLEYLQLDGNHLSGSIPSTIGNLTNLIELYLGLNNLSGSIPPSIGNLINLDVLSLQGNNLSGTIPATIGNMKMLTVLELTTNKLHGSIPQGLNNITNWFSFLIAENDFTGHLPPQICSAGYLIYLNADHNHFTGPVPRSLKNCPSILKIRLDGNQLEGDIAQDFGVYPNLDYIDLSDNKLYGQISPNWGKCHNLNTLKISNNNISGGIPIELVEATKLGVLHLSSNHLNGKLPKELGNMKSLIQLKISNNNISGNIPTEIGSLQNLEELDLGDNQLSGTIPIEVVKLPKLWYLNLSNNRINGSIPFEFHQFQPLESLDLSGNLLSGTIPRPLGDLKKLRLLNLSRNNLSGSIPSSFDGMSGLTSVNISYNQLEGPLPKNQAFLKAPIESLKNNKDLCGNVTGLMLCPTNRNQKRHKGILLVLFIILGALTLVLCGVGVSMYILCLKGSKKATRAKESEKALSEEVFSIWSHDGKVMFENIIEATDNFNDKYLIGVGGQGSVYKAELSSDQVYAVKKLHVEADGEQHNLKAFENEIQALTEIRHRNIIKLCGYCKHTRFSFLVYKFLEGGSLDQILSNDTKAAAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNILLDSQYEAHVSDFGTAKILKPDSHTWTTFAVTYGYAAPELAQTTEVTEKCDVFSFGVLCLEIIMGKHPGDLMSSLLSSSSATITYNLLLIDVLDQRPPQPLNSIVGDVILVASLAFSCISENPSSRPTMDQVSKKLMMGKPPLADQFPMIRLGQLL* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1812 1082 Pfam Leucine rich repeat 547 605 IPR001611 GO:0005515
Gso18g1812 1082 Pfam Leucine rich repeat 619 677 IPR001611 GO:0005515
Gso18g1812 1082 Pfam Leucine rich repeat 233 293 IPR001611 GO:0005515
Gso18g1812 1082 Pfam Leucine rich repeat 306 365 IPR001611 GO:0005515
Gso18g1812 1082 SUPERFAMILY RNI-like 92 399 - -
Gso18g1812 1082 Coils Coil 819 846 - -
Gso18g1812 1082 SUPERFAMILY RNI-like 345 684 - -
Gso18g1812 1082 Gene3D Ribonuclease Inhibitor 43 197 IPR032675 -
Gso18g1812 1082 Gene3D Ribonuclease Inhibitor 298 402 IPR032675 -
Gso18g1812 1082 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 188 - -
Gso18g1812 1082 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 259 1081 - -
Gso18g1812 1082 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 180 261 - -
Gso18g1812 1082 SUPERFAMILY Protein kinase-like (PK-like) 778 1062 IPR011009 -
Gso18g1812 1082 PANTHER LRR RECEPTOR-LIKE KINASE 7 188 - -
Gso18g1812 1082 PANTHER LRR RECEPTOR-LIKE KINASE 180 261 - -
Gso18g1812 1082 PANTHER LRR RECEPTOR-LIKE KINASE 259 1081 - -
Gso18g1812 1082 Gene3D Ribonuclease Inhibitor 198 297 IPR032675 -
Gso18g1812 1082 Gene3D Transferase(Phosphotransferase) domain 1 871 1068 - -
Gso18g1812 1082 ProSiteProfiles Protein kinase domain profile. 792 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1812 1082 Pfam Protein kinase domain 793 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1812 1082 Gene3D Phosphorylase Kinase; domain 1 751 870 - -
Gso18g1812 1082 SMART LRR_typ_2 640 663 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 568 591 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 352 376 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 231 255 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 183 207 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 328 351 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 592 615 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 135 159 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 280 303 IPR003591 -
Gso18g1812 1082 SMART LRR_typ_2 304 327 IPR003591 -
Gso18g1812 1082 SMART LRR_sd22_2 376 399 - -
Gso18g1812 1082 SMART LRR_sd22_2 328 354 - -
Gso18g1812 1082 SMART LRR_sd22_2 616 642 - -
Gso18g1812 1082 SMART LRR_sd22_2 183 215 - -
Gso18g1812 1082 SMART LRR_sd22_2 568 589 - -
Gso18g1812 1082 SMART LRR_sd22_2 280 306 - -
Gso18g1812 1082 SMART LRR_sd22_2 231 257 - -
Gso18g1812 1082 Gene3D Ribonuclease Inhibitor 403 712 IPR032675 -
Gso18g1812 1082 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Gso18g1812 1082 ProSitePatterns Tyrosine protein kinases specific active-site signature. 916 928 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1812 Gso-Chr18 50656758 50660704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1812 23 964 Receptor kinase-like Gene Family AT4G08850 43.925 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g1812 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1812 - - gmx:100815688 2097.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1812 18 50656758 50660704 Gso9g2001 9 44486444 44490301 GST