Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1802 ATGGATAATTATTGTGATGCTACTACTGCTACTACTGAATCCGACATGACACTTTCGGACCTTATTCAACATTACATGCATGATGATGAAGCCAATGCTTTGAACAATAATGTGGAAGGTGCTAAAGCACAAAAAGAAGTTCCGAAATGGACGAGGTACAAAGGAGTGAGGCGTAGGGCACATGGAAAGTTTGCTGCTGAGATAACAGACCCAAACAAAAATGGTAGGGTTTGGCTTGGGACTTATGACACTGAAGAGGAAGCTGCTTTGGCCTATGACAATGCTGCTTTCAAGATCAGAGGCTCCAAAGCCAAGCTCAATTTTCCTCACCTCATTCCACCCAAGCTGCCATTGGATGCTTCAATTGCAAGTAGCCAGATGAGTGACCCTCCTTCTTCATCATCCACATTTGAGGATGGTTTAGAAGGATCCAAGAAAACGAAGGGGATAGCTGGTTTGCTAAATAAATTAGCCCATGAACGAAATAGAGTTTGA 495 0.4303 MDNYCDATTATTESDMTLSDLIQHYMHDDEANALNNNVEGAKAQKEVPKWTRYKGVRRRAHGKFAAEITDPNKNGRVWLGTYDTEEEAALAYDNAAFKIRGSKAKLNFPHLIPPKLPLDASIASSQMSDPPSSSSTFEDGLEGSKKTKGIAGLLNKLAHERNRV* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1802 164 MobiDBLite consensus disorder prediction 122 144 - -
Gso18g1802 164 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Gso18g1802 164 CDD AP2 51 111 IPR001471 GO:0003700|GO:0006355
Gso18g1802 164 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Gso18g1802 164 PANTHER DNA-BINDING DOMAIN 10 162 IPR044808 GO:0003700|GO:0009873
Gso18g1802 164 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Gso18g1802 164 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Gso18g1802 164 MobiDBLite consensus disorder prediction 122 140 - -
Gso18g1802 164 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Gso18g1802 164 PRINTS Ethylene responsive element binding protein signature 91 111 IPR001471 GO:0003700|GO:0006355
Gso18g1802 164 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 10 162 - -
Gso18g1802 164 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1802 Gso-Chr18 50488084 50488578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1802 40 112 AP2-EREBP Transcription Factor Family AT2G44840 68.919 5.12e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso18g1802 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1802 K09286 - gmx:100819961 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1802 18 50488084 50488578 Gso9g1992 9 44331734 44332607 GST
Gso3g0959 3 33681380 33682178 Gso18g1802 18 50488084 50488578 PCT