Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1801 ATGGTTTCCGCCACCGTGGATTCCGATTTTGCATTCTTGGAATCTGTTCAACAATACCTACTTGGACATGATTCCATCAATCTCATGTCTGAAACCCACCAAGCTGCATCTCATGATCCATTTTCAGACCCTAATAAATGTGATGGTGATTCAGGGAACATTGCTTTCCGAAGTGAGGATGCAACGGCTGTGGTGGCGCGTGATCATGCGCCACCAACATGGAAGCATTACAGAGGGGTGAGGCGTAGACCGTGGGGAAAGTTTGCGGCCGAGATTAGGGATCCAAAGAAGAACGGAGCTAGGGTTTGGCTTGGCACGTATGATACCGAAGAGAAGGCGGCTTTGGCATATGACAAAGCCGCTTTCAAAATGCGAGGCCAAAAGGCCAAGCTGAATTTTCCTCATCTTATTGATTCTGACAATTCCGATGAATTGTCGGAGCCAGTAATGATGACAACTTCCAAGCGAAGTTTGTTAGAAATTTCATCACCGTCGTCCTCCTGTTCAGATGATAGCTCAGAATCACAAGGGACAAAGAGGAGGAAGAGCCTGGCTGAACTACTGAATAAATTAGCCAAGAATAGAAGCCAAGTCAAGGTGGAATGTTGA 609 0.4647 MVSATVDSDFAFLESVQQYLLGHDSINLMSETHQAASHDPFSDPNKCDGDSGNIAFRSEDATAVVARDHAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNSDELSEPVMMTTSKRSLLEISSPSSSCSDDSSESQGTKRRKSLAELLNKLAKNRSQVKVEC* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1801 202 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Gso18g1801 202 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Gso18g1801 202 PANTHER DNA-BINDING DOMAIN 1 197 IPR044808 GO:0003700|GO:0009873
Gso18g1801 202 ProSiteProfiles AP2/ERF domain profile. 76 134 IPR001471 GO:0003700|GO:0006355
Gso18g1801 202 MobiDBLite consensus disorder prediction 158 173 - -
Gso18g1801 202 CDD AP2 75 136 IPR001471 GO:0003700|GO:0006355
Gso18g1801 202 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Gso18g1801 202 PRINTS Ethylene responsive element binding protein signature 116 136 IPR001471 GO:0003700|GO:0006355
Gso18g1801 202 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 197 - -
Gso18g1801 202 SMART rav1_2 76 140 IPR001471 GO:0003700|GO:0006355
Gso18g1801 202 MobiDBLite consensus disorder prediction 158 182 - -
Gso18g1801 202 SUPERFAMILY DNA-binding domain 76 135 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1801 Gso-Chr18 50481759 50482610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1801 76 176 AP2-EREBP Transcription Factor Family AT2G44840 63.366 8.88e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso18g1801 AP2 2.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1801 K09286 - gmx:548037 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0968 7 11915093 11916078 Gso18g1801 18 50481759 50482610 PCT
Gso3g0964 3 33799186 33799915 Gso18g1801 18 50481759 50482610 PCT