Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1800 ATGTCATCCACAACCACGGATTCAGATTGTTCATATTTGGAACAAATTCAACAATATCTCCTTCACAATGATTCAACAATTCTAACACCACCTCAAGCTTTTCCAAGCCCTAGCCATGATAGTAGTTCGGATGCAAGTGTCCACTTTGAGCACCCTTCGGAAGCGCATGACGTGAACGCGCCACCCAAATGGAGGCGCTACCGGGGTGTGAGGCGTAGGCCATGGGGGAAGTTCGCAGCAGAGATAAGAGATCCAAAGAAAAATGGTTCTAGGGTTTGGCTCGGAACTTATGTTAACGAGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAACATGCGTGGCCAAAAGGCTAAGCTGAATTTTCCTCACCTCATTGGCTCTGCTGTGCAGCCGGAACCACCGTGTCTGGCGGTTTCTAAGAGGAGCTTACCAGAGTCTTCTCCCCCAACATCACCATATGATAGTTGTGAGTCAAAAGGGTCTAAGAGGAGGAAGAGCCTAGTTGATTTGCTCAATAACTTAGCCAAGAACAAAAGCCAAGCCAAGGTGGTAGAAATGGCCTTGGAGGCAAATGAGGTTGAGCAATGGGTGAATGAATTGAATGATTGCACTCTATTCTGGTGCTCCTAG 636 0.4748 MSSTTTDSDCSYLEQIQQYLLHNDSTILTPPQAFPSPSHDSSSDASVHFEHPSEAHDVNAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGSRVWLGTYVNEEEAALAYDKAAFNMRGQKAKLNFPHLIGSAVQPEPPCLAVSKRSLPESSPPTSPYDSCESKGSKRRKSLVDLLNNLAKNKSQAKVVEMALEANEVEQWVNELNDCTLFWCS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1800 211 MobiDBLite consensus disorder prediction 44 60 - -
Gso18g1800 211 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Gso18g1800 211 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Gso18g1800 211 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 182 - -
Gso18g1800 211 MobiDBLite consensus disorder prediction 27 43 - -
Gso18g1800 211 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Gso18g1800 211 MobiDBLite consensus disorder prediction 27 60 - -
Gso18g1800 211 PANTHER DNA-BINDING DOMAIN 1 182 IPR044808 GO:0003700|GO:0009873
Gso18g1800 211 CDD AP2 74 126 IPR001471 GO:0003700|GO:0006355
Gso18g1800 211 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Gso18g1800 211 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gso18g1800 211 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso18g1800 211 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Gso18g1800 211 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1800 Gso-Chr18 50476878 50477773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1800 63 129 AP2-EREBP Transcription Factor Family AT2G44840 80.597 6.89e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso18g1800 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1800 K09286 - gmx:102663872 417.927