Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1794 ATGCGCATGGAAGGAAGAGAAGGCTTCAGTTCGGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCCTATCATATGGCACCAAGGAGTGAAGCTCCAAGTCAGGTTCCTCCTCCTGTTCCTGAAGCAACAGCTGGAGCTATTGGTGTCTCACCTGTGAGTGTGGGATTGGATGGAACAGCAGCTAAGAAGAAAAGGGGTAGACCAAGGAAATACGGGCCAGATGGGTTGAACTCTATGGCATTGTCACCCATGCCAATCTCATCTTCAGCTCCATTTGCTAATAACTTCTCATCCGGGAAGCGGGGGAAATCGCGGGGGATGGAGTACAAGCTGCTGAAGAAAGTCGGAGTGGATCTTTTTGGTGACTCTGTTGGTACAAACTTTATGCCCCATATCATTACAGTCAATACTGGTGAGGACATTACAATGAAGGTTATATCTTTTTCCCAACAAGGACCCCGTGCAATATGCATCCTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGCCAGCCTGATTCTTCTGGGGGAACCTTAACCTATGAGGGCCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGACAACCAAGGATCAAGAAGCAGGTCGGGTGGGATGAGCGTTTCATTGTCAAGTCCAGATGGTCGTGTTGTAGGTGGTGGAGTTGCTGGTCTCCTTGTAGCTGCCGGTCCTGTGCAGGTGGTGGTGGGAAGCTTTTTGCCAAACAACCAGCAAGATCAGAAACCAAAGAAGCCAAAGTCTGACTATGCACCAGCTAATGTCACTCCTTCCATTACGGTGTCTTCTGCACCACCCCCTACTAATGGTGAAAAGGAGGATGTCATTGGTGGACACCTACTACACAACAACTCAGGAACAACCCTTAACTCAAACCTTACTCCTCCCTCGGCCTTTCGTCGCGAAAACTGGGTTAACATGCACTCCATGACAGACTCGATGAAGTCGGCTACTGACATTAACATATCTCTTCCTGATAGTTGA 1017 0.4808 MRMEGREGFSSGVTVIGAEAPSAYHMAPRSEAPSQVPPPVPEATAGAIGVSPVSVGLDGTAAKKKRGRPRKYGPDGLNSMALSPMPISSSAPFANNFSSGKRGKSRGMEYKLLKKVGVDLFGDSVGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGSRSRSGGMSVSLSSPDGRVVGGGVAGLLVAAGPVQVVVGSFLPNNQQDQKPKKPKSDYAPANVTPSITVSSAPPPTNGEKEDVIGGHLLHNNSGTTLNSNLTPPSAFRRENWVNMHSMTDSMKSATDINISLPDS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1794 338 Gene3D - 131 266 - -
Gso18g1794 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 3 337 IPR039605 GO:0003680
Gso18g1794 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Gso18g1794 338 MobiDBLite consensus disorder prediction 264 278 - -
Gso18g1794 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 248 - -
Gso18g1794 338 ProSiteProfiles PPC domain profile profile. 126 267 IPR005175 -
Gso18g1794 338 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 3 337 - -
Gso18g1794 338 MobiDBLite consensus disorder prediction 292 307 - -
Gso18g1794 338 MobiDBLite consensus disorder prediction 58 77 - -
Gso18g1794 338 MobiDBLite consensus disorder prediction 245 307 - -
Gso18g1794 338 CDD DUF296 131 221 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1794 Gso-Chr18 50394351 50399722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1794 8 275 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.436 8.02e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1794 - - gmx:100777213 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1794 18 50394351 50399722 Gso9g2217 9 46513960 46519255 GST
Gso18g1794 18 50394351 50399722 Gso1g1217 1 48147801 48155028 PCT
Gso18g1794 18 50394351 50399722 Gso3g0187 3 2484240 2491265 PCT
Gso1g1217 1 48147801 48155028 Gso18g1794 18 50394351 50399722 PCT
Gso3g0187 3 2484240 2491265 Gso18g1794 18 50394351 50399722 PCT