Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1784 ATGGGCAATTGCGGTACCAGAGAGGAATCTGCTGTGGTTTCCAACGCTCAAGTTGTTCAGCAGCTTCACCATGCGACGTCGTTGGGCGCGAGTGCGAGGAGCCAGAATGCAGGTAGCGAGAAGAAGCACGGTCACGGTCACGGTCACAGGCACAATCTGAGCGAGTGCGCTTCGGATCTGAGCGAGTCCTGTTCCACACCGCACGGTAACAATAGCAACAACACGCTGCTCTACACGCACGTGATCGCCTTCACGCTCTACGAGTTGGAGACCATAACGAAGAGCTTCCGCGGCGACTATATCCTCGGTGAGGGAGGCTTCGGCACCGTTTACAAAGGTTACATTGATGAGAACGTCAGAGTCGGACTCAAATCGCTCCCTGTCGCTGTCAAAGTGTTAAACAAAGAGGGTTTACAAGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTAGGGCAGCTGAGGCATCCTAATCTGGTGAAGTTGATTGGGTACTGCTGCGAAGATGATCACAGGCTGCTTGTGTATGAGTTCATGTTTCGAGGGAGTTTGGAAAATCACTTGTTCCGAAAGGCAACTGTCCCTTTATCATGGGCTACAAGAATGATGATTGCTCTTGGAGCAGCCAAAGGACTTGCCTTTCTCCACAATGCTGAAAGGCCTGTAATCTATCGTGACTTCAAAACGTCTAATATATTATTGGACTCCGACTATACAGCCAAACTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAAGGTGATGAAACCCATGTATCCACCCGAGTGATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTGACGGCTAGGAGTGATGTCTATAGCTTTGGCGTTGTTCTTTTGGAACTTTTAACGGGGAGGAAATCTGTTGACAAGACCAGACCTGGAAAGGAACAGAGCTTGGTAGATTGGGCACGGCCGAAGCTCAATGACAAGAGAAAGCTCCTTCAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCAGCACAAAAAGCATGTAGCTTGGCTTATTACTGTTTGAGTCAAAATCCCAAAGCAAGGCCACTAATGAGTGATGTGGTTGAGACATTGGAGCCTTTGCAAAGTTCAAGTGTTGGTCCAGGTGAAGTCTCATTATCTGGATCAAATAGTGGGAGTGCTGGGCCTTTTGCTATGAACAAAATCTCTGACTACCGGATGCGCCACAAGTTTTCAAACAACGTTGGTCCCGGTGCTACTTGTCGGTCTCCGAACCCGAATTGCTCACCAGGTGGCCCAGCAACATTACGGGTCAGATGA 1326 0.4857 MGNCGTREESAVVSNAQVVQQLHHATSLGASARSQNAGSEKKHGHGHGHRHNLSECASDLSESCSTPHGNNSNNTLLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGPGEVSLSGSNSGSAGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGGPATLRVR* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1784 441 CDD STKc_IRAK 102 376 - -
Gso18g1784 441 MobiDBLite consensus disorder prediction 30 53 - -
Gso18g1784 441 ProSitePatterns Protein kinases ATP-binding region signature. 102 131 IPR017441 GO:0005524
Gso18g1784 441 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 42 428 - -
Gso18g1784 441 MobiDBLite consensus disorder prediction 418 441 - -
Gso18g1784 441 SUPERFAMILY Protein kinase-like (PK-like) 70 374 IPR011009 -
Gso18g1784 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Gso18g1784 441 MobiDBLite consensus disorder prediction 418 432 - -
Gso18g1784 441 Pfam Protein tyrosine and serine/threonine kinase 101 373 IPR001245 GO:0004672|GO:0006468
Gso18g1784 441 Gene3D Transferase(Phosphotransferase) domain 1 179 383 - -
Gso18g1784 441 PANTHER OS01G0588500 PROTEIN-RELATED 42 428 - -
Gso18g1784 441 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1784 441 Gene3D Phosphorylase Kinase; domain 1 58 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1784 Gso-Chr18 50293275 50297428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1784 70 373 Glycoside Hydrolase AT3G07070 53.074 3.03e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso18g1784 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1784 - - gmx:102662348 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1784 18 50293275 50297428 Gso9g2229 9 46601449 46604932 GST