Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g1783 ATGGCTTCTTCTAATTCCTTCAATCTTCTCTTCCTCTACATCTTCTTCAATTTCACAACCACCAAAGCACAAGTCTCTCCCATCATCATGTACCCATTTTGCCAAGACACCACCACCAACACCACTTACCAAGCAAACCTCAAGACCCTCTTGTCTTCCTTGGTTTCAAACGCCATTTTCAACAGATTCTACAACGACACAATCCAAAACACAGTCTTCGGCCTATTCATGTGCAGAGGCGACGTGTCCCACATACTCTGCCAACAATGCGTCCAAAACGCGACCAACAAACTATCCTCGTACCCACAGTGCTCCGTCTCCAAACAAGCCGTAACCTACTACGACGAGTGCATGGTTCGCTACTCCAACGCCTCGTTCTTCTCCACCCTCACCACCGAACCCAGCGTACGCGAATTCAACAAAGCCTACATCTCCAGCAACGAAACCATCTTCACGAGCCTCTTATCCGACACCATGAACCAAACCATACAAGCAGCAACAAATCCCATGACATGGGGCAGTAACTACTACGCCGCCAGACACGCGAACGTGTCGGACATTCAGACGCTCTACTGTGTGGCGCAGTGCACCATGGACCTCTCGCGTCAAGATTGCGCCACCTGTCTCGCCAACGCAACAACCACGCTTCTGTTGTTATACGAGGAGAAACAAGGAGGAAGAGTTTTGTACCCTAGCTGCAACGTTAGGTTTGAACTATACCCTTTCTATCAAGAAACCAAAAATAGCTTAGATTCTAACGGATTAGGTGGACTCGTTCCCGAAACCAGATATGAATATCCACTTTCAGATCCAAAATATTCTGGATACATTTCCCATAACTGTTCCTCAAACCTTGCCATTCTTCAAAACGATGACGTTTCATTCAAACCATACACAAACCTCACGACTCTTTTTTCTTACTTGATTTCTAATGCCACCGACGGCGCTGAATTTCAAATGCAAGTTGGGAATCTGTATGGCTTGTTCATGTGTCGCGGTGACGTGGATAACCGTGCCGTTTGTGGAGAATGCGTGCGAAACGCGTCGGAGAGGGTGGTCTCGGAGTGTCGTTTTGCCAACGAGGGTGTGATTTGGTTCGAGTACTGTTTGGTTCGGTTTTCGGATCGGGATTTTTTCTCCGTAGTGGAGAGGAATCCGAGGTTTCAGAAGTTGAACGTGACGAACCGTGACGAGCGGGATGATGAAAACTCGTTTACTTCTACGGTTTCGAATAAGTTGGCTTGGATGGAGAGCCAAACAGGAGGTAGTGGTTCCAGGTACCGGAATGCGACGTTGGCGTTGAACCAGATCCAAACGCTTTATATTGTGGCTCAGTGCACGCGAGATCTTTCCAGCGACGATTGTGAAGTATGCTTAAGTGATGTGGTATCGGCGATTCCTTGGCGTCGTTTGGGGAGCGTTGGTGGAAGAGTTCTGTACCCTAGCTGTTTTCTCAGGTTTGAACAGTTTCAGTTTTTGAACCATTGGATGGCCCCGTCGCTGTCTCCGTCGCCGCTGCCGCCGTCGCCGCCGTCTACCCCGCAACGTCCAGAAATAAGAAGTTCGTCACGAACAACTGTCTCTATTGTTGTTCCCGTCATTATCATTTCGGTGATACTCTTCTCTTTTGGATGCTACTTCATACGTACAAAAGCAAAGAATTACAAGACCATTCTCAAAGAAAATTTTGGAGCTGAAAGTACTAATGTAGAGCCATTGCAATTTGATTTGGTTATAATCAAAGCAGCAACAAACAACTTTTCAGATGAGAATAAGATTGGCAAAGGTGGATTTGGTGAAGTTTACAAGGGCATTCTTACTGATGGAAGACATATTGCGGTAAAAAGACTGTCAAAAACTTCTAGGCAAGGTGCACAAGAGTTCAGAAATGAGGTTTTATTAATAGCGAAGCTTCAACATAGAAATCTCGTGGAATTCATTGGATTTTGTCTGGATGAAGAAGAAAAAATACTTATATATGAATACGTGTCAAACAAGAGTTTGGATTACTTCTTATTTGGTACTCAATTGCAAAAGGTATTCAATTGGTCGGAGCGTTACACAATTATAGGAGGAATTGCTCGAGGAATTCTTTATTTACATGAATACTCTCGACTTAAAGTTATACATCGTGATCTTAAACCTAGTAATATATTATTAGACCAAAATATGAACCCAAAAATTTCAGATTTTGGTCTTGCTAGAATTGTTGAAATAGATCAACAAGAAGGAAGTACAAACAGAATTATTGGAACATATGGGTACATGTCTCCAGAGTATGCAATGTTTGGACAATTTTCTGAGAAATCAGATGTTTACAGTTTTGGAGTTATGATTTTGGAGATTATCACCGGAAGAAAGAATGTGGGTTCTTATGAATCATATGGTGTTGTTGATGGTCTTCTAAGTTTTGTTTGGAGACAATGGACGGACCAAACACCGCTGAACATATTAGACCCAAAATTGAGAGGAGATTATTCCAAAATTGAAGTCATTAAGTGCATTCAAATTGGTTTATTATGTGTTCAAGAAAATCCGGATGCTAGACCTTCAATGTTGGCAATTGCTTCATATCTTAGCAATCACTCAATTGAATTGCCACCTCCACTAGAACCAGCAATCTTTATCTTGAATAGTAAAATGAATCCACAGATAGTTACACATGAATCAAGTTCCAGTCAATCTGCCAAGAATTCCACTCCATTATCAATCAATGAAATGACTATAAGTGACTTCTATCCTCGGTAG 2748 0.4276 MASSNSFNLLFLYIFFNFTTTKAQVSPIIMYPFCQDTTTNTTYQANLKTLLSSLVSNAIFNRFYNDTIQNTVFGLFMCRGDVSHILCQQCVQNATNKLSSYPQCSVSKQAVTYYDECMVRYSNASFFSTLTTEPSVREFNKAYISSNETIFTSLLSDTMNQTIQAATNPMTWGSNYYAARHANVSDIQTLYCVAQCTMDLSRQDCATCLANATTTLLLLYEEKQGGRVLYPSCNVRFELYPFYQETKNSLDSNGLGGLVPETRYEYPLSDPKYSGYISHNCSSNLAILQNDDVSFKPYTNLTTLFSYLISNATDGAEFQMQVGNLYGLFMCRGDVDNRAVCGECVRNASERVVSECRFANEGVIWFEYCLVRFSDRDFFSVVERNPRFQKLNVTNRDERDDENSFTSTVSNKLAWMESQTGGSGSRYRNATLALNQIQTLYIVAQCTRDLSSDDCEVCLSDVVSAIPWRRLGSVGGRVLYPSCFLRFEQFQFLNHWMAPSLSPSPLPPSPPSTPQRPEIRSSSRTTVSIVVPVIIISVILFSFGCYFIRTKAKNYKTILKENFGAESTNVEPLQFDLVIIKAATNNFSDENKIGKGGFGEVYKGILTDGRHIAVKRLSKTSRQGAQEFRNEVLLIAKLQHRNLVEFIGFCLDEEEKILIYEYVSNKSLDYFLFGTQLQKVFNWSERYTIIGGIARGILYLHEYSRLKVIHRDLKPSNILLDQNMNPKISDFGLARIVEIDQQEGSTNRIIGTYGYMSPEYAMFGQFSEKSDVYSFGVMILEIITGRKNVGSYESYGVVDGLLSFVWRQWTDQTPLNILDPKLRGDYSKIEVIKCIQIGLLCVQENPDARPSMLAIASYLSNHSIELPPPLEPAIFILNSKMNPQIVTHESSSSQSAKNSTPLSINEMTISDFYPR* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g1783 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Gso18g1783 915 SMART serkin_6 587 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1783 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 513 906 - -
Gso18g1783 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 276 497 - -
Gso18g1783 915 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 259 - -
Gso18g1783 915 CDD STKc_IRAK 593 859 - -
Gso18g1783 915 Gene3D Transferase(Phosphotransferase) domain 1 663 866 - -
Gso18g1783 915 ProSiteProfiles Gnk2-homologous domain profile. 387 492 IPR002902 -
Gso18g1783 915 ProSiteProfiles Gnk2-homologous domain profile. 25 126 IPR002902 -
Gso18g1783 915 ProSiteProfiles Gnk2-homologous domain profile. 269 378 IPR002902 -
Gso18g1783 915 ProSiteProfiles Gnk2-homologous domain profile. 132 242 IPR002902 -
Gso18g1783 915 Pfam Salt stress response/antifungal 400 489 IPR002902 -
Gso18g1783 915 Pfam Salt stress response/antifungal 34 123 IPR002902 -
Gso18g1783 915 Pfam Salt stress response/antifungal 147 240 IPR002902 -
Gso18g1783 915 Pfam Salt stress response/antifungal 299 375 IPR002902 -
Gso18g1783 915 ProSitePatterns Protein kinases ATP-binding region signature. 593 615 IPR017441 GO:0005524
Gso18g1783 915 Gene3D Phosphorylase Kinase; domain 1 549 662 - -
Gso18g1783 915 Pfam Protein kinase domain 588 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g1783 915 SUPERFAMILY Protein kinase-like (PK-like) 570 892 IPR011009 -
Gso18g1783 915 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 276 497 - -
Gso18g1783 915 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 17 259 - -
Gso18g1783 915 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 513 906 - -
Gso18g1783 915 Gene3D - 135 242 IPR038408 -
Gso18g1783 915 Gene3D - 29 126 IPR038408 -
Gso18g1783 915 Gene3D - 388 492 IPR038408 -
Gso18g1783 915 Gene3D - 275 378 IPR038408 -
Gso18g1783 915 ProSiteProfiles Protein kinase domain profile. 587 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g1783 Gso-Chr18 50284608 50288800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g1783 269 915 Receptor kinase-like Gene Family AT4G05200 41.705 1.46e-167 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g1783 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g1783 - - gmx:100806248 1743.78